Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq285305 389 5e-103 seq12009 102 1e-16 seq178749 87.8 2e-12 seq52848 87.8 2e-12 seq171131 86.0 8e-12 >seq285305 Length=1559 Score = 389 bits (430), Expect = 5e-103 Identities = 984/1486 (66%), Gaps = 40/1486 (3%) Strand=Plus/Minus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || |||||||| | | | || || || || || ||||||| | | Sbjct 1464 CGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGT 1405 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| || || || ||||| ||||| || ||| | || || || ||||| || | Sbjct 1404 TGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCA 1345 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 ||||||| || || || ||||| || ||||| | ||| || || | |||||||| || | Sbjct 1344 ATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCA 1285 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || | || || || || || || || || ||||| || ||||||||| ||| | Sbjct 1284 CTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTT 1225 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 ||||| ||| ||||| ||| || | || ||| ||| | || | | Sbjct 1224 GGGCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGG 1165 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | ||||||||||| || || ||||||| | || || |||| | || || ||||| Sbjct 1164 ACGCCAGATTACAGACCGCCACCTCATCCTGGCT--GGTGTATTCAACTATCTCTGTGCA 1107 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 |||||||| || |||||||| || | ||| || || || ||||| |||| || || || Sbjct 1106 GAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 1047 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 || || || || |||| ||||| ||||| |||| || || ||||| || | ||| || Sbjct 1046 TTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACAC 987 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAAT 71940 ||||||| | | |||| | || || || |||| ||||| | | Sbjct 986 CTGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGC 927 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAA 71999 | || ||||| || ||||| ||| | ||| | || ||||| || |||||||||||| Sbjct 926 C--TCAAACTCCTCCCCCCA-GCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAG 870 Query 72000 TGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 ||||| ||| | | ||| |||| ||||| ||||| || || ||||| || || Sbjct 869 AGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCC 813 Query 72058 ATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 || || || ||||||| ||| |||||||| || || || ||||| || || || | ||| Sbjct 812 GTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAA 753 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | |||| |||||||||| |||| ||| ||||| | |||| || | ||||| Sbjct 752 ATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTT 693 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||||| || | ||||| || ||||| || ||||| |||| ||| || | | || Sbjct 692 GCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCC 633 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 || || || ||||| || | ||| ||||| || | | | || ||| | | Sbjct 632 GTTAGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGC 573 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| ||||| | ||||| | || | ||| ||||| || Sbjct 572 CACACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAAT 513 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 ||| || || || || ||| ||||| || || || ||||| |||| | ||| | || Sbjct 512 GCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA---GCTGAGGCCT 456 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| | ||||| || || ||||| || || Sbjct 455 -GTT---------GGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTT 406 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| ||||| || || | || || | | || ||||| |||| || | ||| | Sbjct 405 GTAGGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAG 346 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| |||| || | | ||| || || ||||||| ||||||| |||| Sbjct 345 CATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAG 286 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || ||||| ||||||| || || |||| ||| |||| || |||| ||||| Sbjct 285 AGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAG 226 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT--- 72712 || |||| | ||| || | | || | ||| || || || || || | Sbjct 225 GCGGTCTTTATTCTCCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGC 167 Query 72713 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772 |||| ||| || || | |||||| | | |||||||||||| ||||| || | || Sbjct 166 GTTT---ATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTT 110 Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832 | ||||| |||||||| || ||||| || || || | || || || ||||| || || | Sbjct 109 TCTTTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGG 50 Query 72833 GATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTC 72878 | |||| || || ||||| || || || |||||||| ||||| Sbjct 49 GGTGTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4 >seq12009 Length=4249 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||| || || || || || |||| ||||| | | Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || ||||||| || || ||||| || | ||||||||||||||||||| Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051 >seq178749 Length=757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || ||||||||||| ||||| | ||| | Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| |||||||| || || || || || |||| Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427 Query 42207 C 42207 | Sbjct 428 C 428 >seq52848 Length=1214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || ||||| | || || ||| | ||||| || ||||||||||| | ||| | Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167 Query 42147 TAAGCCAAAATATAGACGCAAA-TGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 | |||||| | || | ||||| || ||||| |||||||| || || || || ||||| Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107 Query 42206 GCAATAAGTCTCTCTCC 42222 || | | || |||||| Sbjct 106 GCCACGATTCGCTCTCC 90 >seq171131 Length=971 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||| | || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 971 TAGGTGTCGATGAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 912 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || ||||||||||||||||| || ||||| ||||| Sbjct 911 CCATAGAAACATCTGGCCTCCGTCACCTGCACTTC 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668638040375640