Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 389 5e-103
seq12009 102 1e-16
seq178749 87.8 2e-12
seq52848 87.8 2e-12
seq171131 86.0 8e-12
>seq285305
Length=1559
Score = 389 bits (430), Expect = 5e-103
Identities = 984/1486 (66%), Gaps = 40/1486 (3%)
Strand=Plus/Minus
Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467
|||| || || || |||||||| | | | || || || || || ||||||| | |
Sbjct 1464 CGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGT 1405
Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527
|||| || || || ||||| ||||| || ||| | || || || ||||| || |
Sbjct 1404 TGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCA 1345
Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587
||||||| || || || ||||| || ||||| | ||| || || | |||||||| || |
Sbjct 1344 ATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCA 1285
Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647
|| || | || || || || || || || || ||||| || ||||||||| ||| |
Sbjct 1284 CTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTT 1225
Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704
||||| ||| ||||| ||| || | || ||| ||| | || | |
Sbjct 1224 GGGCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGG 1165
Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762
| ||||||||||| || || ||||||| | || || |||| | || || |||||
Sbjct 1164 ACGCCAGATTACAGACCGCCACCTCATCCTGGCT--GGTGTATTCAACTATCTCTGTGCA 1107
Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822
|||||||| || |||||||| || | ||| || || || ||||| |||| || || ||
Sbjct 1106 GAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 1047
Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882
|| || || || |||| ||||| ||||| |||| || || ||||| || | ||| ||
Sbjct 1046 TTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACAC 987
Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAAT 71940
||||||| | | |||| | || || || |||| ||||| | |
Sbjct 986 CTGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGC 927
Query 71941 CGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAA 71999
| || ||||| || ||||| ||| | ||| | || ||||| || ||||||||||||
Sbjct 926 C--TCAAACTCCTCCCCCCA-GCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAG 870
Query 72000 TGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057
||||| ||| | | ||| |||| ||||| ||||| || || ||||| || ||
Sbjct 869 AGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCC 813
Query 72058 ATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116
|| || || ||||||| ||| |||||||| || || || ||||| || || || | |||
Sbjct 812 GTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAA 753
Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176
| | | |||| |||||||||| |||| ||| ||||| | |||| || | |||||
Sbjct 752 ATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTT 693
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|||||||| || | ||||| || ||||| || ||||| |||| ||| || | | ||
Sbjct 692 GCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCC 633
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
|| || || ||||| || | ||| ||||| || | | | || ||| | |
Sbjct 632 GTTAGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGC 573
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| ||| ||||| || || ||| ||||| | ||||| | || | ||| ||||| ||
Sbjct 572 CACACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAAT 513
Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416
||| || || || || ||| ||||| || || || ||||| |||| | ||| | ||
Sbjct 512 GCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA---GCTGAGGCCT 456
Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476
||| | ||||| || || ||||| || ||
Sbjct 455 -GTT---------GGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTT 406
Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536
||| ||||| || || | || || | | || ||||| |||| || | ||| |
Sbjct 405 GTAGGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAG 346
Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596
||| ||||| |||| || | | ||| || || ||||||| ||||||| ||||
Sbjct 345 CATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAG 286
Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656
||| || || ||||| ||||||| || || |||| ||| |||| || |||| |||||
Sbjct 285 AGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAG 226
Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT--- 72712
|| |||| | ||| || | | || | ||| || || || || || |
Sbjct 225 GCGGTCTTTATTCTCCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGC 167
Query 72713 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772
|||| ||| || || | |||||| | | |||||||||||| ||||| || | ||
Sbjct 166 GTTT---ATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTT 110
Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832
| ||||| |||||||| || ||||| || || || | || || || ||||| || || |
Sbjct 109 TCTTTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGG 50
Query 72833 GATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTC 72878
| |||| || || ||||| || || || |||||||| |||||
Sbjct 49 GGTGTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4
>seq12009
Length=4249
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | ||| || || || ||||| || || || || || |||| ||||| | |
Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
||||||| || ||||||| || || ||||| || | |||||||||||||||||||
Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
|| || || || |||||| | || | || ||||| ||||||||
Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051
>seq178749
Length=757
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || || | |||||||| || || ||||||||||| ||||| | ||| |
Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || | || || || ||||| |||||||| || || || || || ||||
Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427
Query 42207 C 42207
|
Sbjct 428 C 428
>seq52848
Length=1214
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/137 (74%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||| || ||||| | || || ||| | ||||| || ||||||||||| | ||| |
Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167
Query 42147 TAAGCCAAAATATAGACGCAAA-TGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205
| |||||| | || | ||||| || ||||| |||||||| || || || || |||||
Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107
Query 42206 GCAATAAGTCTCTCTCC 42222
|| | | || ||||||
Sbjct 106 GCCACGATTCGCTCTCC 90
>seq171131
Length=971
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394
|| || ||||| | || || ||||| ||||| || ||||| || ||||| ||||| ||
Sbjct 971 TAGGTGTCGATGAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 912
Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429
|| ||||||||||||||||| || ||||| |||||
Sbjct 911 CCATAGAAACATCTGGCCTCCGTCACCTGCACTTC 877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 668638040375640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |