Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq209621 118 1e-21 seq123391 118 1e-21 seq207831 84.2 3e-11 >seq209621 Length=1424 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || |||||||||| || ||||| || || || || || ||| |||||| Sbjct 648 TCACCTATGATGATGAGTCTGGTAGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 589 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| | ||||| || || || ||||||||||| ||||| ||||| || || |||||||| Sbjct 588 TCTTGCTTCAGGACGTCACAGACTCTGTTGTGCTCCCTCAGCCATATGGTGGCGTACATG 529 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9777 |||| || |||| || |||||| ||| ||||||| ||||||||| Sbjct 528 GTGAGGCCCGGCAGCATGCCAAAGAACTCCTGACCGATGGCCAGACGC 481 >seq123391 Length=1400 Score = 118 bits (130), Expect = 1e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| ||| || || || | ||| | | | |||||||| Sbjct 1291 GGACACCACTTGGTGTTGAGACACACCAGTTTCTTCAAAGTGGAAGTTTTGACGATATTG 1232 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| || || || || |||||||| |||||||| | ||||||||||| ||| Sbjct 1231 AAGCCCGTCTCGCCCCCAAAAGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATAGGGTTT 1172 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| |||||||| ||||| || ||||| |||| ||| | || |||||||| || || Sbjct 1171 CCCATCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCAACCATACTCTCACCAAATATA 1112 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 | || ||||||| || |||| |||| || | ||| ||||| | ||| || |||| Sbjct 1111 GTGTGAGGACGGGTTTTCTCCAGTAAGATGCCCGGGTAGAACTCTAAAGCATCTATGT 1054 >seq207831 Length=3119 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || || |||||||| || |||||||| ||||| ||||| ||| ||| ||||| ||| Sbjct 2399 CCAATGATGATGAGGCGGGTGGTCTGGAACAGCTGTTCATCATCCCAGGTGGGATGCTCT 2340 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACAT 9728 |||||| | || || |||| ||| || ||||| ||||| | ||||||||||| Sbjct 2339 GCTTTCAGGATGTCACAGACTCGGTTATGCTCCCTCAGCCACAGTGTAGCGTACAT 2284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705884314058160