Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 408 5e-109
seq178749 105 8e-18
seq12009 93.3 5e-14
seq52848 91.5 2e-13
>seq285305
Length=1559
Score = 408 bits (452), Expect = 5e-109
Identities = 985/1483 (66%), Gaps = 38/1483 (3%)
Strand=Plus/Minus
Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62663
|| || || || |||||||| | | | |||| || || || || || |||| | ||
Sbjct 1462 GCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTG 1403
Query 62664 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62723
|| || || || |||| ||||| || ||| | || || || |||||||| |||
Sbjct 1402 AGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAAT 1343
Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783
||||| ||||| || ||||| || || || | ||| || || | |||||||| || |
Sbjct 1342 CCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACT 1283
Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843
|| || | || || || || || || || || ||||| |||||||||||| ||| |
Sbjct 1282 GGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGG 1223
Query 62844 TTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAAGGCAACAGAT 62900
|||||| ||| ||||| ||| || | || ||||||| | || | ||
Sbjct 1222 GCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGAC 1163
Query 62901 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 62958
||||||||||| || || ||||||| | || | |||| | |||||| ||||| |
Sbjct 1162 GCCAGATTACAGACCGCCACCTCATCCTGGCTGGTG--TATTCAACTATCTCTGTGCAGA 1105
Query 62959 GATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 63018
||||||| || ||||| || || | ||| || || || ||||| |||| || || || |
Sbjct 1104 GATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1045
Query 63019 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 63078
| || || ||| | || ||||| ||||| |||| || || ||||| || | ||| ||
Sbjct 1044 TGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCT 985
Query 63079 CTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA--GTGTATACAATCG 63136
||||||| | | ||| | | || || || ||| ||||| | | |
Sbjct 984 GCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCC- 926
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
|| ||||| || ||||| | ||||| || ||||| || ||||||||||| ||
Sbjct 925 -TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGA 867
Query 63197 CCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254
||| ||| || | ||| ||||| ||||| ||||| || || ||||| || || ||
Sbjct 866 CCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTA 810
Query 63255 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313
|| || ||||||| ||| || ||||| || || || ||||| || || || | ||| |
Sbjct 809 GAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATC 750
Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373
| | |||| |||||||||| |||| ||| ||||| | |||| || | ||||| ||
Sbjct 749 GAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCC 690
Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433
|||||| || | ||||| || ||||| || ||||| |||| ||| || | | |||||
Sbjct 689 TCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTT 630
Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63493
|| | || ||||| || | ||| ||||| || | | | || || | | |
Sbjct 629 AGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCAC 570
Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553
||| ||||| || || ||| ||||| | ||||| | || | ||||||||| || ||
Sbjct 569 ACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCC 510
Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613
|| ||||| || || ||||| || || || ||||| |||| | ||| | || ||
Sbjct 509 TTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA---GCTGAGGCCT-GT 454
Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673
| | ||||| || || || || || |||||
Sbjct 453 T---------GGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTGTA 403
Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733
||||| || || | ||| || | | || ||||| || | || | ||| | |||
Sbjct 402 GGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGCAT 343
Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793
|||||| |||| || | | ||| ||| || ||||||| ||||||| |||| |||
Sbjct 342 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGAGT 283
Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853
|| || ||||| ||||||| || || |||| ||| |||| || ||||||||||
Sbjct 282 CTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 223
Query 63854 ATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT---GTT 63909
|| |||| | ||| || | | || | ||| || || || || || | |||
Sbjct 222 GTCTTTATTCTCCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGTT 164
Query 63910 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 63969
| ||| || || | |||||| | | |||||||||||| ||||| || | ||| |
Sbjct 163 T---ATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTTCT 107
Query 63970 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64029
|||| |||||||| || ||||| || || || | || || || ||||| || || || |
Sbjct 106 TTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGT 47
Query 64030 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 64072
||| || || ||||| || || || |||||||| |||||
Sbjct 46 GTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4
>seq178749
Length=757
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || || |||||||| || || ||||||||||| ||||| | ||| |
Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || |||| ||||| || ||||| |||||||| || || || || || ||||
Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427
Query 33446 C 33446
|
Sbjct 428 C 428
>seq12009
Length=4249
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
|||| || | ||| || || || ||||| || || || || || |||| ||||| | |
Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157
Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074
||||||| || ||||||| || || ||||| || | || ||||||||||||||||
Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097
Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120
|| || || || |||||| | || | || || || ||||||||
Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051
>seq52848
Length=1214
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/137 (75%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| || || ||||| || || || ||| | ||||| || ||||||||||| | ||| |
Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167
Query 33386 TAAGCCAAAATATGGAAGCGAA-TGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33444
| |||||| | |||| ||| || || ||||| |||||||| || || || || |||||
Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107
Query 33445 GCAATAAGTCTCTCTCC 33461
|| | | || ||||||
Sbjct 106 GCCACGATTCGCTCTCC 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620625639309240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |