Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 205 9e-48
seq12009 131 2e-25
>seq285305
Length=1559
Score = 205 bits (226), Expect = 9e-48
Identities = 711/1096 (65%), Gaps = 40/1096 (4%)
Strand=Plus/Minus
Query 145244 GTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGA 145303
|||||| || ||||||||||||||||| | ||||||| |||| | || ||| |
Sbjct 1549 GTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGG 1490
Query 145304 AAGGAACTGTAACTGCCCCAAGTTTT----GGCGAGCTCGCAACTCGCCTCCAGAGCGCC 145359
| | ||| |||| || | ||| || ||||| ||||||||||| | |
Sbjct 1489 TACGTCTCGTAGGTGCC----GTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGC 1434
Query 145360 GAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGG 145419
| | || |||||||| ||| || |||||||| || || || ||| || ||||
Sbjct 1433 GTAGTAGATTGTCTCAAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGG 1374
Query 145420 CATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATG 145479
|||| ||| | || || || || | || || | || | ||||| |||| ||
Sbjct 1373 GTAACGCATCAGGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTG 1314
Query 145480 TTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATT 145534
| ||||| |||| | ||| ||| | ||| | | ||| |||||| ||
Sbjct 1313 ACGCTTGTTGGACTTCTCAGCTTCGGGCACTGGGTAGAAGTT-GAT----GTCGATGATC 1259
Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGA 145594
|| |||| ||||| ||| | ||| || || | || || |||| ||||||||| |
Sbjct 1258 TTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAA---A 1202
Query 145595 GCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTC 145654
| | ||| | || | | |||| ||||| ||||||| |||||| || ||| |
Sbjct 1201 GTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACC 1142
Query 145655 TCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCC 145714
|| || | | |||||| || ||||| | ||| | ||| || ||||||||||| ||
Sbjct 1141 TCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCG 1082
Query 145715 AGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCA 145774
||||| ||||| || || ||||||||||| ||||| |||||||||||||||||| ||
Sbjct 1081 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCG 1022
Query 145775 GTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGG 145834
|| || ||| | ||| | || | || | ||| || |||| ||| |
Sbjct 1021 GTTTCTGTCTGGGACTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACGCGCTTG 962
Query 145835 TAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCG 145894
|||||| || ||||| ||||||| |||||||| | || |||| |||
Sbjct 961 ACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCG 902
Query 145895 GACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGC 145954
||| |||||||||| | | ||||||||||| ||||| | |||| | || | |
Sbjct 901 TCCAGCCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTC 842
Query 145955 TCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGCAATCCT 146012
| ||| || | || || | |||||| |||| | | ||| | || |||||| ||||
Sbjct 841 TTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGC--TCCT 784
Query 146013 CAGCACCCATGTTTCGCTTCAAAT-TAAGCACACTATAGATGTCCGCGTGCCACGGTTCA 146071
| ||| |||| ||||| | ||| | | | | | || |||||||| ||
Sbjct 783 CCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATCGA-ACACATCAAAATGCCACGGCTCC 725
Query 146072 ATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGACGTACCATG 146128
| || | ||||| |||||| | || | ||||| |||||||| |||| ||| || ||
Sbjct 724 AGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTATCGTGCCGTG 665
Query 146129 TTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT---AGAGTTT 146185
||||| | || | || |||||| ||| ||| | | |||||| || || |
Sbjct 664 TTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGCCAGCG--- 608
Query 146186 ATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTG 146245
|| | | ||| || | | ||| ||| ||| |||| || || | | |||
Sbjct 607 ATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCCGCTGATTTG 548
Query 146246 GATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAA 146303
|| || |||||| | ||||| || || ||||| |||||||| ||| |||| |
Sbjct 547 GAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCGTCCTTC--A 490
Query 146304 TGCCGAGCAGAAAGCA 146319
|| ||||||| |||||
Sbjct 489 TGGCGAGCAGGAAGCA 474
>seq12009
Length=4249
Score = 131 bits (144), Expect = 2e-25
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||| | || |||||||| ||||| |||||| ||||||||||||||||||| ||||| |
Sbjct 3093 TGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 3034
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787
| || ||||||||||| |||||||||||||||||||| ||| |||||| || ||| |
Sbjct 3033 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTG 2974
Query 145788 TCTCCACGAT 145797
||| | |||
Sbjct 2973 ACTCGATGAT 2964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 470253732197760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |