Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 396 3e-105
seq12009 96.9 4e-15
seq178749 93.3 5e-14
seq52848 82.4 1e-10
>seq285305
Length=1559
Score = 396 bits (438), Expect = 3e-105
Identities = 982/1483 (66%), Gaps = 38/1483 (3%)
Strand=Plus/Minus
Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518
|| || || || |||||||| | | | |||| || || || || || |||| | ||
Sbjct 1462 GCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTG 1403
Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578
|| || || || |||| ||||| || ||| | || || || ||||| || |||
Sbjct 1402 AGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAAT 1343
Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638
||||| ||||| || ||||| || || || | ||| || || | |||||||| || |
Sbjct 1342 CCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACT 1283
Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698
|| || | || || || || || || || || ||||| |||||||||||| ||| |
Sbjct 1282 GGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGG 1223
Query 62699 TTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATGCAACAGAT 62755
|||||| ||| ||||| ||| || | || ||||||| | || | ||
Sbjct 1222 GCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGAC 1163
Query 62756 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 62813
||||||||||| || || ||||||| | || | |||| | |||||| ||||| |
Sbjct 1162 GCCAGATTACAGACCGCCACCTCATCCTGGCTGGTG--TATTCAACTATCTCTGTGCAGA 1105
Query 62814 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 62873
||||||| || |||||||| || | ||| || || || ||||| |||| || || || |
Sbjct 1104 GATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1045
Query 62874 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 62933
| || || ||| | || ||||| ||||| |||| || || ||||| || | ||| ||
Sbjct 1044 TGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCT 985
Query 62934 CTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACAATCG 62991
||||||| | | ||| | || || || ||| ||||| | | |
Sbjct 984 GCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCC- 926
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
|| ||||| || ||||| | |||||| || ||||| || ||||||||||| ||
Sbjct 925 -TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGA 867
Query 63052 CCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109
||| ||| || | ||| ||||| ||||| ||||| || || ||||| || || ||
Sbjct 866 CCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTA 810
Query 63110 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168
|| || ||||||| ||| || ||||| || || || ||||| || || || | ||| |
Sbjct 809 GAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATC 750
Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228
| | |||| |||||||||| |||| ||| ||||| | |||| || | ||||| ||
Sbjct 749 GAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCC 690
Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288
|||||| || | ||||| || ||||| || ||||| |||| ||| || | | || ||
Sbjct 689 TCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTT 630
Query 63289 GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63348
|| | || ||||| || | ||| ||||| || | | | || || | | |
Sbjct 629 AGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCAC 570
Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408
||| ||||| || || ||| ||||| | ||||| | || | ||| ||||| |||||
Sbjct 569 ACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCC 510
Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468
|| || || || ||| ||||| || || || ||||| |||| | ||| | || ||
Sbjct 509 TTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA---GCTGAGGCCT-GT 454
Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528
| | ||||| || || || || || |||||
Sbjct 453 T---------GGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTGTA 403
Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588
||||| || || | ||| || | | || ||||| || | || | ||| | |||
Sbjct 402 GGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGCAT 343
Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648
|||||| |||| || | | ||| ||| || ||||||| ||||||| |||| |||
Sbjct 342 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGAGT 283
Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708
|| || ||||| ||||||| || || |||| ||| |||| || ||||||||||
Sbjct 282 CTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 223
Query 63709 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAAT---GTT 63764
|| |||| | ||| | | | || | ||| || || || || | | |||
Sbjct 222 GTCTTTATTCTCCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGTT 164
Query 63765 TCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 63824
| ||| || |||| |||||| | | |||||||||||| ||||| || | ||| |
Sbjct 163 T---ATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTTCT 107
Query 63825 ttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGAT 63884
|||| || ||||| || ||||| || || || | || || || ||||| || || || |
Sbjct 106 TTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGT 47
Query 63885 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 63927
||| || || ||||| || || || |||||||| |||||
Sbjct 46 GTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4
>seq12009
Length=4249
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | ||| || || |||||||| || || || || || |||| ||||| | |
Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
||||||| || ||||||| || || ||||| || | || ||||||||||||||||
Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
|| || || || || ||| | || | || ||||| ||||||||
Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051
Score = 89.7 bits (98), Expect = 6e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 62797 TATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 62856
||| ||||| ||||| ||||| || | ||||||||||| | ||| || || || |||||
Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027
Query 62857 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 62916
|||| || || ||||| || || ||| |||| || |||||||| |||| || || ||
Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967
Query 62917 AATCGCTTTCCA 62928
|| || | |||
Sbjct 2966 GATGGCGTGCCA 2955
>seq178749
Length=757
Score = 93.3 bits (102), Expect = 5e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||||||||| || || | |||||||| || || ||||||||||| ||||| | ||| |
Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| || |||| || || || ||||| ||||| || || || || || || ||||
Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427
Query 32803 C 32803
|
Sbjct 428 C 428
>seq52848
Length=1214
Score = 82.4 bits (90), Expect = 1e-10
Identities = 101/137 (74%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| || || ||||| | || || ||| | ||||| || ||||||||||| | ||| |
Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167
Query 32743 TAAGCCAAAATATGGACGCAAA-TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801
| |||||| | |||| ||||| || ||||| ||||| || || || || || |||||
Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107
Query 32802 GCAATAAGTCTCTCTCC 32818
|| | | || ||||||
Sbjct 106 GCCACGATTCGCTCTCC 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631270619864400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |