Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq285305 396 3e-105 seq12009 96.9 4e-15 seq178749 93.3 5e-14 seq52848 82.4 1e-10 >seq285305 Length=1559 Score = 396 bits (438), Expect = 3e-105 Identities = 982/1483 (66%), Gaps = 38/1483 (3%) Strand=Plus/Minus Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518 || || || || |||||||| | | | |||| || || || || || |||| | || Sbjct 1462 GCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTG 1403 Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578 || || || || |||| ||||| || ||| | || || || ||||| || ||| Sbjct 1402 AGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAAT 1343 Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638 ||||| ||||| || ||||| || || || | ||| || || | |||||||| || | Sbjct 1342 CCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACT 1283 Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698 || || | || || || || || || || || ||||| |||||||||||| ||| | Sbjct 1282 GGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGG 1223 Query 62699 TTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATGCAACAGAT 62755 |||||| ||| ||||| ||| || | || ||||||| | || | || Sbjct 1222 GCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGAC 1163 Query 62756 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 62813 ||||||||||| || || ||||||| | || | |||| | |||||| ||||| | Sbjct 1162 GCCAGATTACAGACCGCCACCTCATCCTGGCTGGTG--TATTCAACTATCTCTGTGCAGA 1105 Query 62814 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 62873 ||||||| || |||||||| || | ||| || || || ||||| |||| || || || | Sbjct 1104 GATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1045 Query 62874 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 62933 | || || ||| | || ||||| ||||| |||| || || ||||| || | ||| || Sbjct 1044 TGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCT 985 Query 62934 CTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACAATCG 62991 ||||||| | | ||| | || || || ||| ||||| | | | Sbjct 984 GCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCC- 926 Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 || ||||| || ||||| | |||||| || ||||| || ||||||||||| || Sbjct 925 -TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGA 867 Query 63052 CCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63109 ||| ||| || | ||| ||||| ||||| ||||| || || ||||| || || || Sbjct 866 CCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTA 810 Query 63110 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 || || ||||||| ||| || ||||| || || || ||||| || || || | ||| | Sbjct 809 GAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATC 750 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | | |||| |||||||||| |||| ||| ||||| | |||| || | ||||| || Sbjct 749 GAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCC 690 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 |||||| || | ||||| || ||||| || ||||| |||| ||| || | | || || Sbjct 689 TCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTT 630 Query 63289 GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63348 || | || ||||| || | ||| ||||| || | | | || || | | | Sbjct 629 AGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCAC 570 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| ||||| || || ||| ||||| | ||||| | || | ||| ||||| ||||| Sbjct 569 ACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCC 510 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 || || || || ||| ||||| || || || ||||| |||| | ||| | || || Sbjct 509 TTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA---GCTGAGGCCT-GT 454 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 | | ||||| || || || || || ||||| Sbjct 453 T---------GGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTGTA 403 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||| || || | ||| || | | || ||||| || | || | ||| | ||| Sbjct 402 GGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGCAT 343 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 |||||| |||| || | | ||| ||| || ||||||| ||||||| |||| ||| Sbjct 342 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGAGT 283 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 || || ||||| ||||||| || || |||| ||| |||| || |||||||||| Sbjct 282 CTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 223 Query 63709 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAAT---GTT 63764 || |||| | ||| | | | || | ||| || || || || | | ||| Sbjct 222 GTCTTTATTCTCCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGTT 164 Query 63765 TCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 63824 | ||| || |||| |||||| | | |||||||||||| ||||| || | ||| | Sbjct 163 T---ATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTTCT 107 Query 63825 ttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGAT 63884 |||| || ||||| || ||||| || || || | || || || ||||| || || || | Sbjct 106 TTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGT 47 Query 63885 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 63927 ||| || || ||||| || || || |||||||| ||||| Sbjct 46 GTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4 >seq12009 Length=4249 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || || |||||||| || || || || || |||| ||||| | | Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||| | || | || ||||| |||||||| Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 62797 TATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 62856 ||| ||||| ||||| ||||| || | ||||||||||| | ||| || || || ||||| Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027 Query 62857 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 62916 |||| || || ||||| || || ||| |||| || |||||||| |||| || || || Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967 Query 62917 AATCGCTTTCCA 62928 || || | ||| Sbjct 2966 GATGGCGTGCCA 2955 >seq178749 Length=757 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || || | |||||||| || || ||||||||||| ||||| | ||| | Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || |||| || || || ||||| ||||| || || || || || || |||| Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427 Query 32803 C 32803 | Sbjct 428 C 428 >seq52848 Length=1214 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || ||||| | || || ||| | ||||| || ||||||||||| | ||| | Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167 Query 32743 TAAGCCAAAATATGGACGCAAA-TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801 | |||||| | |||| ||||| || ||||| ||||| || || || || || ||||| Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107 Query 32802 GCAATAAGTCTCTCTCC 32818 || | | || |||||| Sbjct 106 GCCACGATTCGCTCTCC 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631270619864400