Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19377 96.9 7e-15 seq217029 89.7 1e-12 seq201919 89.7 1e-12 seq177833 89.7 1e-12 seq285305 87.8 4e-12 seq247517 87.8 4e-12 seq245236 87.8 4e-12 seq236014 87.8 4e-12 seq203600 87.8 4e-12 seq297239 86.0 1e-11 seq287946 86.0 1e-11 seq200228 86.0 1e-11 seq195868 86.0 1e-11 seq184994 86.0 1e-11 seq158543 86.0 1e-11 seq251355 84.2 4e-11 >seq19377 Length=231 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 66 AGCTCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 125 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 126 CCCCACATTGGGC 138 >seq217029 Length=736 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 368 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 427 Query 142562 GCCCCAC 142568 ||||||| Sbjct 428 GCCCCAC 434 >seq201919 Length=2422 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 67 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 8 Query 142562 GCCCCAC 142568 ||||||| Sbjct 7 GCCCCAC 1 >seq177833 Length=785 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 392 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 451 Query 142562 GCCCCAC 142568 ||||||| Sbjct 452 GCCCCAC 458 >seq285305 Length=1559 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 293919 GGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTG 293978 |||||| || || ||||| | ||||| ||||||| ||||||||||| ||| ||| Sbjct 1130 GGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTG 1071 Query 293979 CATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTG 294038 || |||| ||| |||||||| ||| | || || |||| ||||| |||| Sbjct 1070 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTG 1011 Query 294039 AGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTC 294098 | | |||| | ||| || | ||||||||||||||||||| |||| ||||| Sbjct 1010 GGACTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTC 951 Query 294099 AGACTCATACTTGGTGTAAAG 294119 |||||| |||||||| || Sbjct 950 CCTCTCATATTTGGTGTAGAG 930 >seq247517 Length=537 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 257 AGCCCGANTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 198 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 197 CCCCACGTTGGGC 185 >seq245236 Length=1142 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 177 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 236 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 237 AGCCCCAC 244 >seq236014 Length=1968 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 399 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 457 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 458 TCGAGTCCCGGCAGAGA 474 >seq203600 Length=1656 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 141 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 200 Query 142563 CCCCAC 142568 |||||| Sbjct 201 CCCCAC 206 >seq297239 Length=2584 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 475 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 416 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 415 TCCCGGCAGAGA 404 >seq287946 Length=985 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 408 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 467 Query 142564 CCCAC 142568 ||||| Sbjct 468 CCCAC 472 >seq200228 Length=361 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 65 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6 Query 142563 CCCCA 142567 ||||| Sbjct 5 CCCCA 1 >seq195868 Length=431 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 365 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 424 Query 142564 CCCAC 142568 ||||| Sbjct 425 CCCAC 429 >seq184994 Length=706 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 67 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8 Query 142564 CCCAC 142568 ||||| Sbjct 7 CCCAC 3 >seq158543 Length=2287 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2223 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2282 Query 142563 CCCCA 142567 ||||| Sbjct 2283 CCCCA 2287 >seq251355 Length=658 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 590 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 649 Query 142563 CCCCAC 142568 |||||| Sbjct 650 CCCCAC 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1023910560104899