Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq276610 84.2 4e-11 seq176571 84.2 4e-11 seq171131 84.2 4e-11 >seq276610 Length=932 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 ||||||||||| || ||||| |||||||| ||||| ||||| ||| | ||||| || Sbjct 477 CCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATAGTGTC-GCTGGGCTCTACCTC 535 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| | ||||| ||||| |||||||| Sbjct 536 GAGGGTGATGGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCAT 580 >seq176571 Length=1504 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| || || ||| |||||||||| ||| ||||| Sbjct 1134 CATGACGCCCATCCTCTGGTACTCGCCCACACGCTTCTCAAAGAAGTTGGTCTTTCCCTC 1193 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 1194 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 1229 >seq171131 Length=971 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 |||||||| |||||||||||| || ||||||||||||||||||| | |||||| || Sbjct 490 ACCTCCTCTGCGGTCCAGAAAGACGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 431 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 430 TACTGGATGGGGAA 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918187755241080