Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq285305 444 1e-119 seq178749 132 9e-26 seq12009 113 8e-20 seq176571 93.3 8e-14 >seq285305 Length=1559 Score = 444 bits (492), Expect = 1e-119 Identities = 776/1108 (70%), Gaps = 37/1108 (3%) Strand=Plus/Minus Query 244299 CCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGG 244358 |||||||||| |||| || | ||||||||||| || |||| ||| ||| ||||| Sbjct 1536 CCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGG 1477 Query 244359 GACCGTCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 |||| || | | |||||| | |||||| | || |||| ||||||||||| ||||| Sbjct 1476 TGCCGT-GCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCA 1418 Query 244418 AAGATCATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 || ||| |||| | | ||| | |||| || || ||| | ||||| || Sbjct 1417 AAAATCTGGATGTTGA-GCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGAT 1359 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| |||| |||| ||| || || ||||| ||||| || ||||| ||||||||||| Sbjct 1358 GAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTT 1299 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 | ||||||||||| ||||| |||||| |||||| | |||||| ||||| | || Sbjct 1298 CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAAT 1239 Query 244597 CA-TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGG 244655 | | || | || | |||||| | |||||| | || | ||| | | || Sbjct 1238 TACTTTGGTC-ACTTGGGCCAGTTTTTTAAAGTCAAAA--GTCCG----CTCAGGGGTG- 1187 Query 244656 TGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 || || |||||| |||| | ||||| || ||||| |||||||| ||| Sbjct 1186 --------ACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCT 1135 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 | ||||||| | || ||||| |||||||| |||||||| ||||||||||| || | || Sbjct 1134 GGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCT 1075 Query 244776 GGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA 244835 | || ||| ||| |||||||||||| |||||||||||| | || ||||| || Sbjct 1074 GCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTG 1015 Query 244836 GCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTTG 244894 ||||| | | | | | ||| | | | |||||| ||| | || | ||||| Sbjct 1014 TCTGGGACTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACGC-GCTTGACCTTG 956 Query 244895 CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGG 244954 ||||| ||| || |||||| || ||||| ||||| |||||| |||||| || Sbjct 955 CCCTCCCTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAGC 896 Query 244955 CCGGGGCACGACGC-CGGGCACATGAGACTCCACTC---GCCGCCGTCCTTGACCCTCTG 245010 ||||| ||| ||| ||| ||||| ||| ||| || | || ||| || |||| Sbjct 895 CCGGGACACT-CGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTT 840 Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||||||||||||||||||||| ||| | | ||| ||||| |||| || ||||| ||| Sbjct 839 CATGAAGAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTT 780 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||| ||||||||| |||||||||| || || || || || | ||||| ||||||| ||| Sbjct 779 GCCCGTGTTCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTA 720 Query 245131 GACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGT 245189 | |||| ||| ||||| | |||||||||||||||||| || ||| | || | || Sbjct 719 CATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTATCGTGCCGTG-TTGT 661 Query 245190 TGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGG 245249 || | | | ||| | || || | |||||||||| |||||||||||| |||||| | Sbjct 660 TGTAAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGCCAGCGATGTA-G 602 Query 245250 CGCCC--TTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGAT 245307 | ||| ||| |||| | ||||| | || || | ||| || || |||||||| Sbjct 601 CTCCCGGTTG-ATCTGATGCAGCTGACAGCCACACCGATTCCTCCCGCTGATTTGGAGAT 543 Query 245308 GAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAG 245367 ||||||||| ||| | ||||| ||||| || |||||||| ||||||| ||| Sbjct 542 GAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCGTCCTTCATGGCGAG 483 Query 245368 CAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 ||| |||||| ||||||||| ||| || Sbjct 482 CAGGAAGCAGCTGGACAGCTGAGGCCTG 455 >seq178749 Length=757 Score = 132 bits (146), Expect = 9e-26 Identities = 107/127 (84%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| |||| || ||||| ||||||||||| || |||||||| ||||||||| Sbjct 433 TGGTGGCCTTCGCCGCTGTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCT 374 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | |||||||||||| |||||||| ||||| ||||||||||| Sbjct 373 GGCTGAAGAAGAGAGGCCT-GATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGA 315 Query 42825 GACGAGG 42831 ||||||| Sbjct 314 GACGAGG 308 >seq12009 Length=4249 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| ||||| ||||| ||||||| || | ||| ||| Sbjct 4087 ACCTGAAACTCTCCAGAGAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATG 4028 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| ||||||| |||||||| || ||| || || |||||||| | || |||||| Sbjct 4027 GACTCGTTGTTGCCAAGTATCTGGGCAGTGGAGGCTGTGGGCATGGGGGCCATGAGCAGA 3968 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 3967 CTGTTCCTCACACCATGCCT 3948 Score = 93.3 bits (102), Expect = 8e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| | ||||||||||| || || ||| | |||||||| ||||| | ||| | Sbjct 3096 TGGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCT 3037 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCT 244838 | ||| ||| ||||||||||||||||||||||||| | || || || || || Sbjct 3036 GGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCT 2977 Query 244839 GGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT 244898 | | ||| || | || ||| || | | |||||| ||| | | |||| |||||| Sbjct 2976 GTGACTCGATGATGGCGTGCCACAGTTGCTGAGCCTTCACCACACGCCTAGCCCTGCCCT 2917 Query 244899 C 244899 | Sbjct 2916 C 2916 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTT 244380 ||||||||||| || ||| ||||||| ||| | |||| | | | ||||||| Sbjct 3682 CCCTTGCTGACAGGAGAGCCAGCGTAGGTTTCGTAAGTGCCGT-GTTCAGCTGCCAGCTC 3624 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC---ATCTTGTTCATGTC 244437 ||||| | || ||||| ||||||||||||||||| |||||| || ||| || | Sbjct 3623 GCAGCTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCAAAGATCTGGATGTTGAGCAACT- 3565 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 |||||| || ||| ||| | ||| | |||||| |||| ||||| ||||| Sbjct 3564 --GGGCCTCCTGGCTTTCGAATGGGTAACGCATAAGGATGAAGGCGTCAGCCAGACCCTG 3507 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 ||| ||||| || || || ||||| || ||||| || Sbjct 3506 CACTCCGATTCCAATTGGCCTGTGGCGTTTGTTAGA 3471 >seq176571 Length=1504 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 1224 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 1165 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 1164 TGTGGGCGAGTACCAG 1149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940819895690640