Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq285305 111 2e-19 seq178749 93.3 5e-14 seq12009 89.7 6e-13 >seq285305 Length=1559 Score = 111 bits (122), Expect = 2e-19 Identities = 530/835 (63%), Gaps = 13/835 (2%) Strand=Plus/Minus Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 || |||||| || |||||||||| || | | | | || || ||| | |||||||| Sbjct 1538 CTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTA 1479 Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 114219 | ||| | | | |||| ||| |||||||||| |||| |||| || |||||||| Sbjct 1478 GGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTC 1419 Query 114220 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 114279 |||||| | || | || ||||| | ||||||| | || || || Sbjct 1418 AAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGAT 1359 Query 114280 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 114339 || | ||||| | ||||||||||||| || || || | || | | | || ||||| Sbjct 1358 GAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTT 1299 Query 114340 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 ||| ||| || || || || | ||||| | | | || || ||| | | Sbjct 1298 CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAAT 1239 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459 || || || | || || |||| | |||||| | || ||| |||| || Sbjct 1238 TACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTA 1182 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 | | || ||||| |||||||||||||| || | |||||||| ||||| || Sbjct 1181 CATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTC 1122 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 | || || || || | ||| | || |||||||| | |||| || || ||| Sbjct 1121 AACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTT 1062 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 |||| || || || ||||| |||||||| || || || || || || ||||||| | Sbjct 1061 CCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAAT 1002 Query 114640 AATAGCCTTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 114698 ||| || | ||| || | | | | || ||| | ||| | |||||| ||| | Sbjct 1001 AATGGCATACCACACCTGCTGAGCCT-TCACCACGCGCTTGACCTTGCCCTCCCTCTCAT 943 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 | || |||||||| || |||||||| || ||| | ||| ||||| || || Sbjct 942 ATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGC 883 Query 114759 CTGGGCAGAAGAGAGACCA---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815 || || | |||||||| ||| | ||| || | ||||||||||||||| | Sbjct 882 TCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAAGAGGTCGG 826 Query 114816 GGATCCAGAGAGCTGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 114874 ||||||| || | |||| || || | | | ||| || | | ||| || || Sbjct 825 GGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTG-TTCTTC 767 Query 114875 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 114929 || |||||| || || | | ||| |||||||| |||||||||| |||| Sbjct 766 TTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGA 712 >seq178749 Length=757 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| |||||| ||||| || || | ||||| Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || || || ||||| ||||||||||| ||||||||| ||||| | Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427 Query 126186 C 126186 | Sbjct 428 C 428 >seq12009 Length=4249 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||||| | |||| ||||| || | || ||||| |||||| Sbjct 4054 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCAAGTATCTGGGCAGTGGAG 3995 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||||||| || ||||| Sbjct 3994 GCTGTGGGCATGGGGGCCATGAGCAGACTGTT 3963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595127419938120