Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 111 2e-19
seq178749 93.3 5e-14
seq12009 89.7 6e-13
>seq285305
Length=1559
Score = 111 bits (122), Expect = 2e-19
Identities = 530/835 (63%), Gaps = 13/835 (2%)
Strand=Plus/Minus
Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159
|| |||||| || |||||||||| || | | | | || || ||| | ||||||||
Sbjct 1538 CTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTA 1479
Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 114219
| ||| | | | |||| ||| |||||||||| |||| |||| || ||||||||
Sbjct 1478 GGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTC 1419
Query 114220 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 114279
|||||| | || | || ||||| | ||||||| | || || ||
Sbjct 1418 AAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGAT 1359
Query 114280 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 114339
|| | ||||| | ||||||||||||| || || || | || | | | || |||||
Sbjct 1358 GAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTT 1299
Query 114340 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399
||| ||| || || || || | ||||| | | | || || ||| | |
Sbjct 1298 CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAAT 1239
Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459
|| || || | || || |||| | |||||| | || ||| |||| ||
Sbjct 1238 TACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTA 1182
Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519
| | || ||||| |||||||||||||| || | |||||||| ||||| ||
Sbjct 1181 CATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTC 1122
Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579
| || || || || | ||| | || |||||||| | |||| || || |||
Sbjct 1121 AACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTT 1062
Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639
|||| || || || ||||| |||||||| || || || || || || ||||||| |
Sbjct 1061 CCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAAT 1002
Query 114640 AATAGCCTTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 114698
||| || | ||| || | | | | || ||| | ||| | |||||| ||| |
Sbjct 1001 AATGGCATACCACACCTGCTGAGCCT-TCACCACGCGCTTGACCTTGCCCTCCCTCTCAT 943
Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758
| || |||||||| || |||||||| || ||| | ||| ||||| || ||
Sbjct 942 ATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGC 883
Query 114759 CTGGGCAGAAGAGAGACCA---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815
|| || | |||||||| ||| | ||| || | ||||||||||||||| |
Sbjct 882 TCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAAGAGGTCGG 826
Query 114816 GGATCCAGAGAGCTGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 114874
||||||| || | |||| || || | | | ||| || | | ||| || ||
Sbjct 825 GGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTG-TTCTTC 767
Query 114875 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 114929
|| |||||| || || | | ||| |||||||| |||||||||| ||||
Sbjct 766 TTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGA 712
>seq178749
Length=757
Score = 93.3 bits (102), Expect = 5e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125
||||||| | | |||||| || || |||||| |||||| ||||| || || | |||||
Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367
Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185
||| |||||| || || || ||||| ||||||||||| ||||||||| ||||| |
Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427
Query 126186 C 126186
|
Sbjct 428 C 428
>seq12009
Length=4249
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001
||||| ||| | ||||| | ||||| | |||| ||||| || | || ||||| ||||||
Sbjct 4054 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCAAGTATCTGGGCAGTGGAG 3995
Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033
|||||||||||||| |||||||| || |||||
Sbjct 3994 GCTGTGGGCATGGGGGCCATGAGCAGACTGTT 3963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595127419938120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |