Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 158 1e-33
seq12009 107 2e-18
>seq285305
Length=1559
Score = 158 bits (174), Expect = 1e-33
Identities = 594/928 (64%), Gaps = 18/928 (2%)
Strand=Plus/Plus
Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTT 93986
||| ||| |||| || |||||| | | | |||| |||| ||| || ||||
Sbjct 458 GCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATTGAAGGCATTTA 517
Query 93987 CGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGT 94046
|||| || ||| | || || |||||| |||| ||||| |||||||| | |||
Sbjct 518 TGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGGAATCGGTGTGGCTGT 577
Query 94047 CCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCT 94106
| | | | | | | || ||||||| || ||||| |||| ||| ||||| ||
Sbjct 578 CAGCTGCATCAGATCAACCGGGAGCTACATCGCTGGCACCAACGGCAACTCTAACGGGCT 637
Query 94107 CGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAG 94166
|||||| ||||| |||| | ||||||| |||| || ||||| |||||||| || |
Sbjct 638 CGTCCCCATGCTGAGGGTTTACAACAACACGGCACGATACGTCGACCAGGGAGGCAACAA 697
Query 94167 GAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCAT 94226
||| || | ||||| | || || ||||| ||||| || ||| | |||| |
Sbjct 698 GAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCATTTTGATGTGTTCGATTTCTT 757
Query 94227 CGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCT 94286
|| ||| |||||| ||||| || | | || ||||||||||| ||||||| ||
Sbjct 758 GGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAAAGAGCCAGAGACCTTTTCTACGGCCT 817
Query 94287 CTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTG 94346
||| | || ||||| || ||||| | || || | ||| | |||| ||| | ||
Sbjct 818 GTGGATCCCCGACCTCTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTG 877
Query 94347 TCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGC 94406
||| | || |||||||| ||| ||| || || | ||||| | | || |
Sbjct 878 TCCGAGCGAGTGTCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAGGCTCTCTACAC 937
Query 94407 TCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCA 94466
|| || | ||||||||| || | || || | ||| | || ||||| ||
Sbjct 938 CAAATATGAGAGGGAGGGCAAGGTCAAGCGCGTGGTGAAGGCTCAGCAGGTGTGGTATGC 997
Query 94467 GATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAA 94526
|| | || ||| || || ||||| || ||||| | | ||| ||| | |||
Sbjct 998 CATTATTGAGTCCCAGACAGAAACCGGTACACCGTACATGCTCTACAAAGACGCCTGCAA 1057
Query 94527 CGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586
| ||| |||||||||| | ||||| ||||| || ||||| ||||| |||||
Sbjct 1058 CAGGAAGAGCAACCAGCAGAATCTCGGCACCATCAAATGCAGTAATCTCTGCACAGAGAT 1117
Query 94587 TGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTC 94646
|| || || || | ||| ||| | || || ||||| |||| |||||| || ||
Sbjct 1118 AGTTGAATACACCAGCCAGGATGAGGTGGCGGTCTGTAATCTGGCGTCCATC--GCTCTC 1175
Query 94647 CACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAA 94706
|| | || || | ||| || ||| || || | | | || | |
Sbjct 1176 AACAT--GTACGTCACCCCTGAGCG--GACT------TTTGACTTTAAAAAACTGGCCCA 1225
Query 94707 CTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGT 94766
| | | || || |||||||||| | | ||||||| ||||||||||| ||
Sbjct 1226 AGTGACCAAAGTAATTGTGAGAAACCTGAACAAGATCATCGACATCAACTTCTACCCAGT 1285
Query 94767 CCCGGAGGCGGAGAACTCAAACCTGAAGCATC---GGCCCATCGGCATCGGCGTCCAGGG 94823
|| || || ||||| || ||| |||| || |||| ||||| ||||| ||||| ||
Sbjct 1286 GCCCGAAGCTGAGAAGTCCAAC---AAGCGTCACAGGCCGATCGGGATCGGTGTCCAAGG 1342
Query 94824 TTTCGCGGACGCGCTGGTGATGATGCGT 94851
|| |||||||| | | ||||||||
Sbjct 1343 ATTGGCGGACGCCTTCATCCTGATGCGT 1370
>seq12009
Length=4249
Score = 107 bits (118), Expect = 2e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136
|| ||||||| ||| ||||| |||||||||||||||| |||||||| || |||||
Sbjct 3951 CATGGTGTGAGGAACAGTCTGCTCATGGCCCCCATGCCCACAGCCTCCACTGCCCAGATA 4010
Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196
||||||||||||||||| | || ||| |||| |||| | |||| | | |||||||||
Sbjct 4011 CTTGGCAACAACGAGTCCATTGAGGCCTACACCAGCAACATCTACACCCGCCGGGTGCTC 4070
Query 95197 GCCGGGGAATTCCCCGTCA 95215
| || || || | ||||
Sbjct 4071 TCTGGAGAGTTTCAGGTCA 4089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 492879496498440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |