Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq285305 158 1e-33 seq12009 107 2e-18 >seq285305 Length=1559 Score = 158 bits (174), Expect = 1e-33 Identities = 594/928 (64%), Gaps = 18/928 (2%) Strand=Plus/Plus Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTT 93986 ||| ||| |||| || |||||| | | | |||| |||| ||| || |||| Sbjct 458 GCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATTGAAGGCATTTA 517 Query 93987 CGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGT 94046 |||| || ||| | || || |||||| |||| ||||| |||||||| | ||| Sbjct 518 TGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGGAATCGGTGTGGCTGT 577 Query 94047 CCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCT 94106 | | | | | | | || ||||||| || ||||| |||| ||| ||||| || Sbjct 578 CAGCTGCATCAGATCAACCGGGAGCTACATCGCTGGCACCAACGGCAACTCTAACGGGCT 637 Query 94107 CGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAG 94166 |||||| ||||| |||| | ||||||| |||| || ||||| |||||||| || | Sbjct 638 CGTCCCCATGCTGAGGGTTTACAACAACACGGCACGATACGTCGACCAGGGAGGCAACAA 697 Query 94167 GAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCAT 94226 ||| || | ||||| | || || ||||| ||||| || ||| | |||| | Sbjct 698 GAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCATTTTGATGTGTTCGATTTCTT 757 Query 94227 CGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCT 94286 || ||| |||||| ||||| || | | || ||||||||||| ||||||| || Sbjct 758 GGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAAAGAGCCAGAGACCTTTTCTACGGCCT 817 Query 94287 CTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTG 94346 ||| | || ||||| || ||||| | || || | ||| | |||| ||| | || Sbjct 818 GTGGATCCCCGACCTCTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTG 877 Query 94347 TCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGC 94406 ||| | || |||||||| ||| ||| || || | ||||| | | || | Sbjct 878 TCCGAGCGAGTGTCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAGGCTCTCTACAC 937 Query 94407 TCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCA 94466 || || | ||||||||| || | || || | ||| | || ||||| || Sbjct 938 CAAATATGAGAGGGAGGGCAAGGTCAAGCGCGTGGTGAAGGCTCAGCAGGTGTGGTATGC 997 Query 94467 GATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAA 94526 || | || ||| || || ||||| || ||||| | | ||| ||| | ||| Sbjct 998 CATTATTGAGTCCCAGACAGAAACCGGTACACCGTACATGCTCTACAAAGACGCCTGCAA 1057 Query 94527 CGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586 | ||| |||||||||| | ||||| ||||| || ||||| ||||| ||||| Sbjct 1058 CAGGAAGAGCAACCAGCAGAATCTCGGCACCATCAAATGCAGTAATCTCTGCACAGAGAT 1117 Query 94587 TGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTC 94646 || || || || | ||| ||| | || || ||||| |||| |||||| || || Sbjct 1118 AGTTGAATACACCAGCCAGGATGAGGTGGCGGTCTGTAATCTGGCGTCCATC--GCTCTC 1175 Query 94647 CACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAA 94706 || | || || | ||| || ||| || || | | | || | | Sbjct 1176 AACAT--GTACGTCACCCCTGAGCG--GACT------TTTGACTTTAAAAAACTGGCCCA 1225 Query 94707 CTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGT 94766 | | | || || |||||||||| | | ||||||| ||||||||||| || Sbjct 1226 AGTGACCAAAGTAATTGTGAGAAACCTGAACAAGATCATCGACATCAACTTCTACCCAGT 1285 Query 94767 CCCGGAGGCGGAGAACTCAAACCTGAAGCATC---GGCCCATCGGCATCGGCGTCCAGGG 94823 || || || ||||| || ||| |||| || |||| ||||| ||||| ||||| || Sbjct 1286 GCCCGAAGCTGAGAAGTCCAAC---AAGCGTCACAGGCCGATCGGGATCGGTGTCCAAGG 1342 Query 94824 TTTCGCGGACGCGCTGGTGATGATGCGT 94851 || |||||||| | | |||||||| Sbjct 1343 ATTGGCGGACGCCTTCATCCTGATGCGT 1370 >seq12009 Length=4249 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| |||||||| || ||||| Sbjct 3951 CATGGTGTGAGGAACAGTCTGCTCATGGCCCCCATGCCCACAGCCTCCACTGCCCAGATA 4010 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 ||||||||||||||||| | || ||| |||| |||| | |||| | | ||||||||| Sbjct 4011 CTTGGCAACAACGAGTCCATTGAGGCCTACACCAGCAACATCTACACCCGCCGGGTGCTC 4070 Query 95197 GCCGGGGAATTCCCCGTCA 95215 | || || || | |||| Sbjct 4071 TCTGGAGAGTTTCAGGTCA 4089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492879496498440