Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq285305 145 8e-30 >seq285305 Length=1559 Score = 145 bits (160), Expect = 8e-30 Identities = 626/969 (65%), Gaps = 48/969 (5%) Strand=Plus/Minus Query 153206 CCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGG 153265 |||||| | | ||| ||| | ||||||||||||||| | | || ||| | || Sbjct 1559 CCACAGGTCTGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGG 1500 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCAGCTAGCCTCGA 153324 | ||| | |||| |||| |||||| || | |||||| |||||||| ||||| | Sbjct 1499 AGAGCCCGGGTACGTCTCGTAGGTGCCGT-GCTCGGCGGCCAGATCGCAGCTCGCCTCCA 1441 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG--CTTCTTCGCT 153382 | | | ||||| || || || || || | ||||| | || | | ||| ||| Sbjct 1440 GGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTGAG--CCGCTGAGCCTCTGGGCT 1383 Query 153383 CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442 || |||| |||| ||| | |||||||| |||| || |||| ||||| ||||| Sbjct 1382 TTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGAT 1323 Query 153443 GGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGA 153497 || | || || |||| || || ||| || | |||| ||| ||| Sbjct 1322 CGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCAC----TGGG-TAGAAGTTGATG 1268 Query 153498 TCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTA--TCGCCTTAAGTTTCTCGA 153555 ||||| || ||||| ||||| | ||| | ||||| || | | | | ||||| | | Sbjct 1267 TCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGGGCC--AGTTTTTTAA 1210 Query 153556 AATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTA 153614 | ||| | ||| || | | ||||| || || | || || |||||||||||| Sbjct 1209 AGTCAAAAGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGAGCGATGGACGCCAGATTA 1154 Query 153615 CAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCAT 153674 ||||| ||| ||| || | | |||| | || ||||| | |||||| || |||||| Sbjct 1153 CAGACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCAT 1094 Query 153675 TTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATG 153734 || ||| ||| | ||| ||||| ||||| || | ||||| ||||||||| |||||||| Sbjct 1093 TTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATG 1034 Query 153735 TACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCT 153791 |||||| ||||| || || | || | || | ||| || | ||| || Sbjct 1033 TACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACC---ACACCTGCTGAGCC 977 Query 153792 CGCACC-CGC---TGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAA 153847 |||| ||| || | | |||||| ||||| ||| ||| || |||||| Sbjct 976 TTCACCACGCGCTTGACCTT----GCCCTCCCTCTCATATTTGGTGTAGAGAGCCTCAAA 921 Query 153848 CTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACAT 153907 ||| || || |||| ||| | || |||||||||| |||||||||||| ||||| Sbjct 920 CTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGACCAGTC 861 Query 153908 ATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTC 153967 | || | | || | |||||| || || || | ||| || |||| | ||||| Sbjct 860 TTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAAAGGTC 801 Query 153968 GC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGAT-TGAGCACGCTATAGAT 154024 | || | |||| |||||| |||| |||| ||||| | || | | | | | Sbjct 800 TCTGGCTCTTTGC--TCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATCGA-ACAC 744 Query 154025 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCGCCCTG 154081 || ||||| || || | ||| | ||| | ||| || | | || || ||||| Sbjct 743 ATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTG 684 Query 154082 ATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGT 154141 ||||||| || || | |||||| | || | || |||||| | || ||| | | | | Sbjct 683 GTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGAGTT 624 Query 154142 GCCGTTGGT 154150 ||||||||| Sbjct 623 GCCGTTGGT 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494412960304080