Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq285305 122 8e-23 seq12009 84.2 2e-11 >seq285305 Length=1559 Score = 122 bits (134), Expect = 8e-23 Identities = 304/453 (67%), Gaps = 9/453 (2%) Strand=Plus/Minus Query 146340 GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTT 146399 |||||| |||||||| || ||||| | | |||| || ||||| ||| | ||| Sbjct 1463 GGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTT 1404 Query 146400 GACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCG 146457 || || ||| ||||| ||| || | ||| || || | || | |||||||| || Sbjct 1403 GA-GCCGCTGAGCCTCTGGGCTTTCAAACGGG-TAACGCATCAGGATGAAGGCGTCCGCC 1346 Query 146458 AGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCG-C 146516 | || || | |||| || | || | ||| |||||| ||| |||| | | | Sbjct 1345 AATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGC 1286 Query 146517 AGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAA 146576 | |||| ||| |||| |||||||||||||||| || || | ||| | | ||| |||| Sbjct 1285 ACTGGG-TAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCAC 1227 Query 146577 ACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGC 146636 | ||| | ||||||| || | | | ||||| || |||||| || Sbjct 1226 TTGGGCCAGTTTTTTAAAGTCAAAAGTCCGC---TCAGGGGTGACGTACATGTTGAGAGC 1170 Query 146637 GATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGC 146696 ||| || |||| ||||| || || ||| |||| | | || | || ||||| | Sbjct 1169 GATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGT 1110 Query 146697 GCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGG 146756 |||||| || ||||| |||||| |||| | ||| | ||||| || | ||||||||| Sbjct 1109 GCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGC 1050 Query 146757 GTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 ||| |||||||||||||||||| |||||||| Sbjct 1049 GTCTTTGTAGAGCATGTACGGTGTACCGGTTTC 1017 >seq12009 Length=4249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 146689 ATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG 146748 ||||||| ||| || |||||| | |||||| | |||| ||| | ||||| || | || Sbjct 3082 ATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCTG 3023 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 ||||||| |||||||||||||||||| ||| || ||||| Sbjct 3022 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTC 2982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473728733337360