Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq285305 140 3e-28 seq12009 95.1 1e-14 >seq285305 Length=1559 Score = 140 bits (154), Expect = 3e-28 Identities = 372/561 (66%), Gaps = 13/561 (2%) Strand=Plus/Plus Query 123205 GCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGC 123264 ||||| |||| | | | |||||||| |||||||| | |||||||| ||| | | | Sbjct 613 GCACCAACGGCAACTCTAACGGGCTCGTCCCCATGCTGAGGGTTTACAACAACACGGCAC 672 Query 123265 GGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCTAGAACCGT 123321 | ||||||||||||| ||||| | | || || | || || || || || |||| Sbjct 673 GATACGTCGACCAGGGAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGT 732 Query 123322 GGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGA 123381 |||| ||||||||| |||||| || | | || |||| ||| ||| || | | Sbjct 733 GGCATTTTGATGTGTTCGATTTCTTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAAA 792 Query 123382 AAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAG 123441 |||| | || | || |||| | ||| | ||||| | || ||| | || || Sbjct 793 GAGCCAGAGACCTTTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGAGAGTGGAAA 852 Query 123442 ACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCGACGTTTAC 123500 | || | ||||| || |||||||| || || ||||||||| || ||| | Sbjct 853 GCAACCAAGACTGGTCTCTGATGTGTCC-GAGCGAGTGTCCCGGGCTGGACGAGTGCTGG 911 Query 123501 GGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA--CAGGTTAGTC 123558 || | ||||||| | | ||| | |||| ||| | || ||||| || | || Sbjct 912 GGGGAGGAGTTTGAGGCTCTCTACACCAAATATGAGAGGGAGGGCAAGGTCAAGCGCGT- 970 Query 123559 AGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGC 123618 ||| ||| | | ||| | ||||| || | || |||||||| || | Sbjct 971 -GGTGAAGGCTCAGCAGGTGTGGTATGCCATTATTGAGTCCCAGACAGAAACCGGTACAC 1029 Query 123619 CGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAA 123678 |||||||||||||||||||||||||||||||||| | ||| ||| || | || || | Sbjct 1030 CGTACATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTCGGCACCA 1089 Query 123679 TAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC--GATCAAGTGGC 123736 | ||||| |||||||| ||| | || || | ||||||| | ||| ||| | ||||| Sbjct 1090 TCAAATGCAGTAATCTCTGCACAGAGATAGTTGAATACACC--AGCCAGGATGAGGTGGC 1147 Query 123737 CGTGTGTAATTTGGCTTCGAT 123757 || |||||| |||| || || Sbjct 1148 GGTCTGTAATCTGGCGTCCAT 1168 >seq12009 Length=4249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || ||||| |||| ||||| || || || |||||||||||||| |||||||||||| Sbjct 2964 ATCATCGAGTCACAGACAGAAACTGGCACACCATACATGCTCTACAAGGACGCCTGCAAC 3023 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||| ||| || ||||||| || |||| || ||||| ||| |||| || Sbjct 3024 AGGAAGAGCAACCAGCAGAATCTGGGAACCATCAAATCCAGCAATCTGTGCACCGAGATC 3083 Query 123708 ATCGAATACA 123717 || || |||| Sbjct 3084 ATAGAGTACA 3093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450318702724440