Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 140 3e-28
seq12009 95.1 1e-14
>seq285305
Length=1559
Score = 140 bits (154), Expect = 3e-28
Identities = 372/561 (66%), Gaps = 13/561 (2%)
Strand=Plus/Plus
Query 123205 GCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGC 123264
||||| |||| | | | |||||||| |||||||| | |||||||| ||| | | |
Sbjct 613 GCACCAACGGCAACTCTAACGGGCTCGTCCCCATGCTGAGGGTTTACAACAACACGGCAC 672
Query 123265 GGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCTAGAACCGT 123321
| ||||||||||||| ||||| | | || || | || || || || || ||||
Sbjct 673 GATACGTCGACCAGGGAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGT 732
Query 123322 GGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGA 123381
|||| ||||||||| |||||| || | | || |||| ||| ||| || | |
Sbjct 733 GGCATTTTGATGTGTTCGATTTCTTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAAA 792
Query 123382 AAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAG 123441
|||| | || | || |||| | ||| | ||||| | || ||| | || ||
Sbjct 793 GAGCCAGAGACCTTTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGAGAGTGGAAA 852
Query 123442 ACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCGACGTTTAC 123500
| || | ||||| || |||||||| || || ||||||||| || ||| |
Sbjct 853 GCAACCAAGACTGGTCTCTGATGTGTCC-GAGCGAGTGTCCCGGGCTGGACGAGTGCTGG 911
Query 123501 GGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA--CAGGTTAGTC 123558
|| | ||||||| | | ||| | |||| ||| | || ||||| || | ||
Sbjct 912 GGGGAGGAGTTTGAGGCTCTCTACACCAAATATGAGAGGGAGGGCAAGGTCAAGCGCGT- 970
Query 123559 AGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGC 123618
||| ||| | | ||| | ||||| || | || |||||||| || |
Sbjct 971 -GGTGAAGGCTCAGCAGGTGTGGTATGCCATTATTGAGTCCCAGACAGAAACCGGTACAC 1029
Query 123619 CGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAA 123678
|||||||||||||||||||||||||||||||||| | ||| ||| || | || || |
Sbjct 1030 CGTACATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTCGGCACCA 1089
Query 123679 TAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC--GATCAAGTGGC 123736
| ||||| |||||||| ||| | || || | ||||||| | ||| ||| | |||||
Sbjct 1090 TCAAATGCAGTAATCTCTGCACAGAGATAGTTGAATACACC--AGCCAGGATGAGGTGGC 1147
Query 123737 CGTGTGTAATTTGGCTTCGAT 123757
|| |||||| |||| || ||
Sbjct 1148 GGTCTGTAATCTGGCGTCCAT 1168
>seq12009
Length=4249
Score = 95.1 bits (104), Expect = 1e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647
|| ||||| |||| ||||| || || || |||||||||||||| ||||||||||||
Sbjct 2964 ATCATCGAGTCACAGACAGAAACTGGCACACCATACATGCTCTACAAGGACGCCTGCAAC 3023
Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707
||||| | ||| ||| || ||||||| || |||| || ||||| ||| |||| ||
Sbjct 3024 AGGAAGAGCAACCAGCAGAATCTGGGAACCATCAAATCCAGCAATCTGTGCACCGAGATC 3083
Query 123708 ATCGAATACA 123717
|| || ||||
Sbjct 3084 ATAGAGTACA 3093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450318702724440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |