Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq285305 127 3e-24 seq12009 95.1 1e-14 seq178749 93.3 5e-14 >seq285305 Length=1559 Score = 127 bits (140), Expect = 3e-24 Identities = 538/837 (64%), Gaps = 17/837 (2%) Strand=Plus/Minus Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 ||||||||| || |||||||||| || | | | || || ||| | ||||| || Sbjct 1538 CTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTA 1479 Query 116121 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 116180 | ||| | | | |||| ||| |||||||||| |||| |||| || |||||||| Sbjct 1478 GGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTC 1419 Query 116181 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAAT 116240 |||||| | || | || ||||| | ||||||| | ||| || || Sbjct 1418 AAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGAT 1359 Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 || | ||||| | ||||||||||||| || || || | || | | | || ||||| Sbjct 1358 GAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTT 1299 Query 116301 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 116360 ||| ||| || || || || | ||||| | | | || || ||| | | Sbjct 1298 CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAAT 1239 Query 116361 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 116420 || || || | || || |||| | |||||| | || ||| |||| || Sbjct 1238 TACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTA 1182 Query 116421 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 116480 | | || ||||| |||||||||||||| || | |||||||| ||||| || Sbjct 1181 CATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTC 1122 Query 116481 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 | || || || || | ||| | || |||||||| | |||| || || ||| Sbjct 1121 AACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTT 1062 Query 116541 TGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 116600 |||| || || || ||||||||||| || || || || || || || ||||||| | Sbjct 1061 CCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAAT 1002 Query 116601 AATAGCCTTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 116659 ||| || | ||| || | | | | || ||| | ||| | |||||| ||| | Sbjct 1001 AATGGCATACCACACCTGCTGAGCCT-TCACCACGCGCTTGACCTTGCCCTCCCTCTCAT 943 Query 116660 ACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTA 116718 | || |||||||| ||||||||||| || ||| |||| ||| ||||| || || Sbjct 942 ATTTGGTGTAGAGAGCCTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCCGGGACACTCG 884 Query 116719 TCTGGACAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 ||||| | |||||||| ||| | ||| || | ||||||||||||||| Sbjct 883 CTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAAGAGGTCG 827 Query 116776 GGGATCCAGAGCGCCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833 |||||||| || |||| |||| || || | | | ||| || | | ||| || || Sbjct 826 GGGATCCACAG-GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTG-TTCT 769 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 || |||||| || || | | ||| |||||||| |||||||||| |||| Sbjct 768 TCTTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGA 712 >seq12009 Length=4249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||| ||||| || | || ||||| |||||| Sbjct 4054 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCAAGTATCTGGGCAGTGGAG 3995 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||||||| || ||||| Sbjct 3994 GCTGTGGGCATGGGGGCCATGAGCAGACTGTT 3963 >seq178749 Length=757 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || || || || |||||||||||||||||||||||| ||||| | Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427 Query 127659 C 127659 | Sbjct 428 C 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611220819711240