Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 127 3e-24
seq12009 95.1 1e-14
seq178749 93.3 5e-14
>seq285305
Length=1559
Score = 127 bits (140), Expect = 3e-24
Identities = 538/837 (64%), Gaps = 17/837 (2%)
Strand=Plus/Minus
Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120
||||||||| || |||||||||| || | | | || || ||| | ||||| ||
Sbjct 1538 CTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTA 1479
Query 116121 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 116180
| ||| | | | |||| ||| |||||||||| |||| |||| || ||||||||
Sbjct 1478 GGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTC 1419
Query 116181 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAAT 116240
|||||| | || | || ||||| | ||||||| | ||| || ||
Sbjct 1418 AAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGAT 1359
Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300
|| | ||||| | ||||||||||||| || || || | || | | | || |||||
Sbjct 1358 GAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTT 1299
Query 116301 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 116360
||| ||| || || || || | ||||| | | | || || ||| | |
Sbjct 1298 CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAAT 1239
Query 116361 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 116420
|| || || | || || |||| | |||||| | || ||| |||| ||
Sbjct 1238 TACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTA 1182
Query 116421 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 116480
| | || ||||| |||||||||||||| || | |||||||| ||||| ||
Sbjct 1181 CATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTC 1122
Query 116481 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540
| || || || || | ||| | || |||||||| | |||| || || |||
Sbjct 1121 AACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTT 1062
Query 116541 TGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 116600
|||| || || || ||||||||||| || || || || || || || ||||||| |
Sbjct 1061 CCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAAT 1002
Query 116601 AATAGCCTTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 116659
||| || | ||| || | | | | || ||| | ||| | |||||| ||| |
Sbjct 1001 AATGGCATACCACACCTGCTGAGCCT-TCACCACGCGCTTGACCTTGCCCTCCCTCTCAT 943
Query 116660 ACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTA 116718
| || |||||||| ||||||||||| || ||| |||| ||| ||||| || ||
Sbjct 942 ATTTGGTGTAGAGAGCCTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCCGGGACACTCG 884
Query 116719 TCTGGACAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775
||||| | |||||||| ||| | ||| || | |||||||||||||||
Sbjct 883 CTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAAGAGGTCG 827
Query 116776 GGGATCCAGAGCGCCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833
|||||||| || |||| |||| || || | | | ||| || | | ||| || ||
Sbjct 826 GGGATCCACAG-GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTG-TTCT 769
Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890
|| |||||| || || | | ||| |||||||| |||||||||| ||||
Sbjct 768 TCTTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGA 712
>seq12009
Length=4249
Score = 95.1 bits (104), Expect = 1e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| | ||||| | |||| ||||| || | || ||||| ||||||
Sbjct 4054 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCAAGTATCTGGGCAGTGGAG 3995
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994
|||||||||||||| |||||||| || |||||
Sbjct 3994 GCTGTGGGCATGGGGGCCATGAGCAGACTGTT 3963
>seq178749
Length=757
Score = 93.3 bits (102), Expect = 5e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658
||| |||||| || || || || |||||||||||||||||||||||| ||||| |
Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427
Query 127659 C 127659
|
Sbjct 428 C 428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611220819711240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |