Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq285305 131 3e-25 seq12009 96.9 5e-15 >seq285305 Length=1559 Score = 131 bits (144), Expect = 3e-25 Identities = 342/519 (66%), Gaps = 16/519 (3%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || || ||||| ||||| | |||| ||| || | || | || ||||||||| | Sbjct 1123 TCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTC 1064 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || | ||| |||| ||| ||||| | |||| |||| | ||| | || |||| || Sbjct 1063 TTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCA 1004 Query 205004 AGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTA--CATCCCTTGAG 205058 | |||| ||||| | |||||| |||| |||| || | | ||||| Sbjct 1003 ATAATGGCATACCACACCTGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCT---- 948 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 ||| ||||| ||||| || ||| |||| || || | || |||||| |||| | Sbjct 947 -CTCATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGG 892 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | | ||||||||||||||||| || | | || ||| |||| ||| || | Sbjct 891 GACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGA 832 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 ||||| ||||||||||||||| || || || | ||| || | || | || || Sbjct 831 GGTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGT 772 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 |||| |||| |||| || | | || ||||||||||| | ||| ||| | Sbjct 771 TCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGA 712 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 || || || |||||||| || |||||||| || || | | | |||| |||| | Sbjct 711 AGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCC 652 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 |||||| || || || ||||| | | | ||||| |||| Sbjct 651 TCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGC 613 >seq12009 Length=4249 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | | || | Sbjct 4089 TGACCTGAAACTCTCCAGAGAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAA 4030 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | ||||| || ||| ||| ||||||||||| |||| ||||| Sbjct 4029 TGGACTCGTTGTTGCCAAGTATCTGGGCAGTGGAGGCTGTGGGCATGGGGGCCATGAGCA 3970 Query 204312 GGGAGTTGCGCACACC 204327 | ||| | |||||| Sbjct 3969 GACTGTTCCTCACACC 3954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792191865297840