Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq171131 111 2e-19 seq178749 102 8e-17 seq9526 95.1 1e-14 >seq171131 Length=971 Score = 111 bits (122), Expect = 2e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| |||| || ||||||||||||||||||||||||||||| || |||| |||||| Sbjct 730 GCTC-ACCAAGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAAGCCAACACGTGAG 672 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | |||||| | ||| |||| |||||||| || |||||| ||||||| Sbjct 671 AGATGAAGTAGCGCTCCTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTTGACAGGT 612 Query 133394 CCACCT 133399 |||||| Sbjct 611 CCACCT 606 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/116 (77%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAA 133225 |||||||||||||| || | ||||| || ||||| | ||||||||||||||| || | Sbjct 971 TAGGTGTCGATGAGCAGGCTG--TACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGA 914 Query 133226 AGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 | || || || || | ||||| |||||||||||| || | ||| ||||| ||| Sbjct 913 AACCATAGAAACATCTGGCCTCCGTCACCTGCACTTCCTGGGTGAAGCGCTCCACC 858 >seq178749 Length=757 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| |||||||| ||||| | || | Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| || || ||||||| ||||| || || ||||| | Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||| || Sbjct 428 CCACCACGCGCTCTCC 443 >seq9526 Length=675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||| |||| || | || ||||| |||||||| || | ||| Sbjct 675 GGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 616 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 |||||| ||||||||||||||| ||||| | || || ||| | || |||||| |||| Sbjct 615 ACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGG 556 Query 38466 GGCGG 38470 || || Sbjct 555 GGTGG 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498308787269760