Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq269824 181 8e-40 seq180218 93.3 3e-13 seq212102 86.0 5e-11 >seq269824 Length=1075 Score = 181 bits (200), Expect = 8e-40 Identities = 407/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT- 518166 || ||| ||| || || || | |||||| ||||||||||| ||| |||| || Sbjct 403 ACGTCAAAGGTGCCTCCGCCAAGATCAAAGATAAGTACATTGCGCTCTCC-TCTT--TTA 459 Query 518167 --TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||| | ||| || || | || || || || || || || || || |||| || | Sbjct 460 CCTTTATCTAAACCGTAAGCGATGGCTGCTGCTGTGGGCTCGTTGATGATCCTCAGAATA 519 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| || || ||||| || ||||||||||| || || || || ||||| Sbjct 520 TTCAGCCCAGAGATCACCCCAGCATCCTTGGTGGCTTGTCTCTGAGAGTCATTGAAATAC 579 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCGCTTGCCGTTTG 518343 || ||||| || || || |||| || || ||| | ||| || || || | | Sbjct 580 GCTGGAACTGTGATGACTGCATTAGACACCCTCTGTCCCAGG-TAGGCTTCAGCAATCTC 638 Query 518344 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATT 518403 ||||||||| | | ||| || || |||| ||||| | | ||| | || Sbjct 639 CTTCATTTTAACCAGGACCATGGAAGAGATTTCCTCTGGATAGAAAGCCTTAGTCTCGCC 698 Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463 || ||| ||| | | | |||||| | || | || || || || ||||| Sbjct 699 TTTATACTCTACCTGGACTTTTGGTTTTCCATTGTCACTGATCACCTTGAAAGGCCAAAG 758 Query 518464 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523 ||||| || || |||||| | || ||||| | ||| ||||| | ||||| ||||| Sbjct 759 CTTCATGTCAGAATGAACAACCGGATCGTTAAACTTTCTTCCAATGAGCCGTTTGGCATC 818 Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583 ||| || || ||||||||||| || || |||| | ||||| ||||||||||| || Sbjct 819 AAAGATTGTGTTGGTTGGATTCATAGCCACTTGGTTCTTGGCAGCATCTCCAATGAGCCT 878 Query 518584 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643 || || || ||||| | ||||| ||||| || | ||||| |||||||| ||||| Sbjct 879 CTCAGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTTCTGTTACCCTGATCATTGGCAAT 938 Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 518703 ||| || ||||| |||| || | || || |||||| | || || || | |||||| Sbjct 939 AATCTCCACTTTGCCATGCTGGAAAACCCCAACACAAGAGTAGGTGGTGCCCAGATCAAT 998 Query 518704 ACCAAT 518709 |||||| Sbjct 999 ACCAAT 1004 >seq180218 Length=724 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| ||||| ||||| |||| ||||||||||||||| ||||| || || | | ||| Sbjct 483 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGAAGGACA 424 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| || | || | ||||| ||||| ||||| || | || || || || || || Sbjct 423 TTAAGTCCCGAGATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 364 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || || || || || |||| ||||| Sbjct 363 GCCGGCACGGTGATTACAGCATTTGTTAC 335 >seq212102 Length=1117 Score = 86.0 bits (94), Expect = 5e-11 Identities = 195/291 (67%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 |||||| |||||| |||||| ||||| ||||||||||| | ||||| || || || | Sbjct 794 TTTATCCACGGCAGACACATTCAGAATGCCATTGGCATCGATGTCAAAGGTCACCTCCAC 735 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 ||||| || || | ||||||| ||||| ||| | | ||| |||| || ||| Sbjct 734 CTGAGGTACACCACGGGGAGCAGGAGGGATACCTGAGAGTTCAAACTTTCCTAGGAGATT 675 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || |||||||| || | || || || | | || || Sbjct 674 GTTGTCCTTGGTCATGGCTCTCTCACCCTCAAACACCTGAATCAGGACACCTGGCTGGTT 615 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | ||||| | | || | || || || ||||| | | | Sbjct 614 ATCTGAGTATGTGGAGAAGA-TCTGGGTCTGCTTGGAGGGGATGGTGGTGTTACGTTTGA 556 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAG 517538 | | | ||||||| |||||||| || || | ||| ||||| || |||| Sbjct 555 TTAGAGATGTCATAACTCCACCTGCAGTCTCAATACCCAGAGACAGCGGAG 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3766027760750134