Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq269824 181 8e-40
seq180218 93.3 3e-13
seq212102 86.0 5e-11
>seq269824
Length=1075
Score = 181 bits (200), Expect = 8e-40
Identities = 407/606 (67%), Gaps = 8/606 (1%)
Strand=Plus/Plus
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT- 518166
|| ||| ||| || || || | |||||| ||||||||||| ||| |||| ||
Sbjct 403 ACGTCAAAGGTGCCTCCGCCAAGATCAAAGATAAGTACATTGCGCTCTCC-TCTT--TTA 459
Query 518167 --TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|||||| | ||| || || | || || || || || || || || || |||| || |
Sbjct 460 CCTTTATCTAAACCGTAAGCGATGGCTGCTGCTGTGGGCTCGTTGATGATCCTCAGAATA 519
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||| || || ||||| || ||||||||||| || || || || |||||
Sbjct 520 TTCAGCCCAGAGATCACCCCAGCATCCTTGGTGGCTTGTCTCTGAGAGTCATTGAAATAC 579
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCGCTTGCCGTTTG 518343
|| ||||| || || || |||| || || ||| | ||| || || || | |
Sbjct 580 GCTGGAACTGTGATGACTGCATTAGACACCCTCTGTCCCAGG-TAGGCTTCAGCAATCTC 638
Query 518344 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATT 518403
||||||||| | | ||| || || |||| ||||| | | ||| | ||
Sbjct 639 CTTCATTTTAACCAGGACCATGGAAGAGATTTCCTCTGGATAGAAAGCCTTAGTCTCGCC 698
Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463
|| ||| ||| | | | |||||| | || | || || || || |||||
Sbjct 699 TTTATACTCTACCTGGACTTTTGGTTTTCCATTGTCACTGATCACCTTGAAAGGCCAAAG 758
Query 518464 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523
||||| || || |||||| | || ||||| | ||| ||||| | ||||| |||||
Sbjct 759 CTTCATGTCAGAATGAACAACCGGATCGTTAAACTTTCTTCCAATGAGCCGTTTGGCATC 818
Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583
||| || || ||||||||||| || || |||| | ||||| ||||||||||| ||
Sbjct 819 AAAGATTGTGTTGGTTGGATTCATAGCCACTTGGTTCTTGGCAGCATCTCCAATGAGCCT 878
Query 518584 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643
|| || || ||||| | ||||| ||||| || | ||||| |||||||| |||||
Sbjct 879 CTCAGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTTCTGTTACCCTGATCATTGGCAAT 938
Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 518703
||| || ||||| |||| || | || || |||||| | || || || | ||||||
Sbjct 939 AATCTCCACTTTGCCATGCTGGAAAACCCCAACACAAGAGTAGGTGGTGCCCAGATCAAT 998
Query 518704 ACCAAT 518709
||||||
Sbjct 999 ACCAAT 1004
>seq180218
Length=724
Score = 93.3 bits (102), Expect = 3e-13
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| ||||| ||||| |||| ||||||||||||||| ||||| || || | | |||
Sbjct 483 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGAAGGACA 424
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
||||| || | || | ||||| ||||| ||||| || | || || || || || ||
Sbjct 423 TTAAGTCCCGAGATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 364
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313
|| || || || || || |||| |||||
Sbjct 363 GCCGGCACGGTGATTACAGCATTTGTTAC 335
>seq212102
Length=1117
Score = 86.0 bits (94), Expect = 5e-11
Identities = 195/291 (67%), Gaps = 2/291 (1%)
Strand=Plus/Minus
Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308
|||||| |||||| |||||| ||||| ||||||||||| | ||||| || || || |
Sbjct 794 TTTATCCACGGCAGACACATTCAGAATGCCATTGGCATCGATGTCAAAGGTCACCTCCAC 735
Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368
||||| || || | ||||||| ||||| ||| | | ||| |||| || |||
Sbjct 734 CTGAGGTACACCACGGGGAGCAGGAGGGATACCTGAGAGTTCAAACTTTCCTAGGAGATT 675
Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428
|| || || || | || |||||||| || | || || || | | || ||
Sbjct 674 GTTGTCCTTGGTCATGGCTCTCTCACCCTCAAACACCTGAATCAGGACACCTGGCTGGTT 615
Query 517429 ATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAA 517487
|||||| || || | || | ||||| | | || | || || || ||||| | | |
Sbjct 614 ATCTGAGTATGTGGAGAAGA-TCTGGGTCTGCTTGGAGGGGATGGTGGTGTTACGTTTGA 556
Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAG 517538
| | | ||||||| |||||||| || || | ||| ||||| || ||||
Sbjct 555 TTAGAGATGTCATAACTCCACCTGCAGTCTCAATACCCAGAGACAGCGGAG 505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3766027760750134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |