Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq285305 136 5e-27 seq178749 95.1 1e-14 seq52848 87.8 2e-12 >seq285305 Length=1559 Score = 136 bits (150), Expect = 5e-27 Identities = 381/575 (66%), Gaps = 21/575 (4%) Strand=Plus/Plus Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || || |||| || || ||||| || || ||||||||||||||||| ||| || | Sbjct 801 GACCTTTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGAGAGT---GGAAAGCAAC 857 Query 112149 AAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 | |||||||| | ||||| | || ||||| || ||| ||| | ||| || Sbjct 858 CAAGACTGGTCTCTGATGTGTCCGAGCGAGTGTCCCGGGCTGGACGAGTGCTGGGGG-GA 916 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC--GGGCGACTGCGACGGTG 112262 ||||||||| || |||||||| || || ||| | | | | | || | | ||| |||| Sbjct 917 GGAGTTTGAGGCTCTCTACACCAAATATGAG-AGGGAGGGCAAGGTCAAGCGCGT-GGTG 974 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 ||| | |||||| | || ||| | |||| || || || || |||||||| || Sbjct 975 AAGGCTCAGCAGGTGTGGTATGCCATTATTGAGTCCCAGACAGAAACCGGTACACCGTAC 1034 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||| |||||||||||||| ||| ||||| || || ||||| | || ||||| Sbjct 1035 ATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTCGGCACCATCAAA 1094 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | || ||||| ||||| || | |||| || | | |||||| ||| || ||| Sbjct 1095 TGCAGTAATCTCTGCACAGAGATAGTTGAATACACCAGCCAGGATGAGGTGGCGGTCTGT 1154 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 || || || || ||||||||| || ||| || || ||| ||| ||||| | | Sbjct 1155 AATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTTTGACTTT 1211 Query 112503 GAAAAACTCCACGAAGTTACGAA---AACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 ||||||| | |||| || || || ||| | |||||| |||| | || || Sbjct 1212 AAAAAACTGGCCCAAGTGACCAAAGTAATTGT---GAGAAACCTGAACAAGATCATCGAC 1268 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 | || || ||||| || ||| || || || | | | ||| | || || || Sbjct 1269 ATCAACTTCTACCCAGTGCCCGAAGCTGAGAAGTCCAACAAGCGTCACAGGCCGATCGGG 1328 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 ||||||||||||| | ||||| | ||||| || Sbjct 1329 ATCGGTGTCCAAGGATTGGCGGACGCCTTCATCCT 1363 >seq178749 Length=757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| ||||| ||||||||||||||||||||| ||| || | ||||| |||||| |||| Sbjct 417 TGTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 358 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 357 CCTGATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 308 >seq52848 Length=1214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 102238 |||||| || | || ||||| || ||||| |||||||||||||| || | ||| || Sbjct 93 GAGCGAATCGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCTGGCTCNGTTTGCTGC 152 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 ||||||||||| |||||| |||| || ||||| |||||| || || || ||||| || Sbjct 153 CATTTATTGGCTAAAGAAGAGAGGCCTAATGCCGGGTCTCACCTATTCTAATGAGCTGAT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429056020080