Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq285305 138 1e-27 seq12009 95.1 1e-14 >seq285305 Length=1559 Score = 138 bits (152), Expect = 1e-27 Identities = 449/686 (65%), Gaps = 25/686 (4%) Strand=Plus/Minus Query 106145 GTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATAC 106204 ||||| |||| || || | | |||| || ||||||||||||||||| |||| || Sbjct 1486 GTCTCGTAGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAG 1427 Query 106205 ATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGG 106264 || || ||||| || | || | | || || || ||||| | ||| || Sbjct 1426 ATTGTCTCAAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGC 1367 Query 106265 CACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATA 106324 || || || | ||||| | ||||| ||||| | || || || ||||| ||| | Sbjct 1366 ATCAGGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTG 1307 Query 106325 TTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 106381 || ||||| | ||| || || || || || || |||| |||| ||| || Sbjct 1306 TTGGACTT---CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGG 1250 Query 106382 TTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 106438 ||| | ||||| ||||| | | || ||||||| | | |||||||| || | Sbjct 1249 TTTCTC---ACAATTACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCG---C 1196 Query 106439 TCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 106498 || |||| ||| | || ||||| || |||| ||| || || ||| ||||||| Sbjct 1195 TCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCC 1136 Query 106499 TTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTC 106558 | ||||| || | || ||||| || | || | || || || || | |||| Sbjct 1135 TGGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTC 1076 Query 106559 TTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618 | ||||| ||||| ||||||| || || |||||||||||||| || || || || || Sbjct 1075 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCT 1016 Query 106619 GTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCG 106677 ||||| |||| | ||| || | |||||| | | | | || || | | ||| || Sbjct 1015 GTCTGGGACTCAATAATGGCATACCACACCTGCTGAGCCT-TCACCACGCGCTTGACCTT 957 Query 106678 TCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGA 106736 |||||| ||| || || |||||||| || ||||||||||| ||| | || ||| | Sbjct 956 GCCCTCCCTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTC-CCCCCAGCACTCGTCCA 898 Query 106737 GACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCAACCCGCT 106793 | || || || | ||||| | |||||||| ||| | ||| || | || Sbjct 897 GCCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCT 841 Query 106794 TCATGAAAAGGTCTGGAATCCACAGG 106819 ||||||| ||||| || ||||||||| Sbjct 840 TCATGAAGAGGTCGGGGATCCACAGG 815 >seq12009 Length=4249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||| || ||| |||||||||| || || || |||| ||| || || || || Sbjct 3107 CTCGTCTTTACTGGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCC 3048 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || ||||||||||||||||| || || || Sbjct 3047 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCC 2988 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || || |||||||||| || || || | ||||| Sbjct 2987 AGTTTCTGTCTGTGACTCGATGATGGCGTGCCACA 2953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587782096428360