Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 138 1e-27
seq12009 95.1 1e-14
>seq285305
Length=1559
Score = 138 bits (152), Expect = 1e-27
Identities = 449/686 (65%), Gaps = 25/686 (4%)
Strand=Plus/Minus
Query 106145 GTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATAC 106204
||||| |||| || || | | |||| || ||||||||||||||||| |||| ||
Sbjct 1486 GTCTCGTAGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAG 1427
Query 106205 ATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGG 106264
|| || ||||| || | || | | || || || ||||| | ||| ||
Sbjct 1426 ATTGTCTCAAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGC 1367
Query 106265 CACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATA 106324
|| || || | ||||| | ||||| ||||| | || || || ||||| ||| |
Sbjct 1366 ATCAGGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTG 1307
Query 106325 TTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 106381
|| ||||| | ||| || || || || || || |||| |||| ||| ||
Sbjct 1306 TTGGACTT---CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGG 1250
Query 106382 TTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 106438
||| | ||||| ||||| | | || ||||||| | | |||||||| || |
Sbjct 1249 TTTCTC---ACAATTACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCG---C 1196
Query 106439 TCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 106498
|| |||| ||| | || ||||| || |||| ||| || || ||| |||||||
Sbjct 1195 TCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCC 1136
Query 106499 TTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTC 106558
| ||||| || | || ||||| || | || | || || || || | ||||
Sbjct 1135 TGGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTC 1076
Query 106559 TTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618
| ||||| ||||| ||||||| || || |||||||||||||| || || || || ||
Sbjct 1075 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCT 1016
Query 106619 GTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCG 106677
||||| |||| | ||| || | |||||| | | | | || || | | ||| ||
Sbjct 1015 GTCTGGGACTCAATAATGGCATACCACACCTGCTGAGCCT-TCACCACGCGCTTGACCTT 957
Query 106678 TCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGA 106736
|||||| ||| || || |||||||| || ||||||||||| ||| | || ||| |
Sbjct 956 GCCCTCCCTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTC-CCCCCAGCACTCGTCCA 898
Query 106737 GACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCAACCCGCT 106793
| || || || | ||||| | |||||||| ||| | ||| || | ||
Sbjct 897 GCCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCT 841
Query 106794 TCATGAAAAGGTCTGGAATCCACAGG 106819
||||||| ||||| || |||||||||
Sbjct 840 TCATGAAGAGGTCGGGGATCCACAGG 815
>seq12009
Length=4249
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
||| || ||| |||||||||| || || || |||| ||| || || || ||
Sbjct 3107 CTCGTCTTTACTGGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCC 3048
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
|| ||||| ||||| ||||| ||||||| || ||||||||||||||||| || || ||
Sbjct 3047 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCC 2988
Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646
|| || |||||||||| || || || | |||||
Sbjct 2987 AGTTTCTGTCTGTGACTCGATGATGGCGTGCCACA 2953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587782096428360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |