Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq269824 192 5e-43 seq180218 109 4e-18 seq212102 95.1 1e-13 seq178611 86.0 5e-11 >seq269824 Length=1075 Score = 192 bits (212), Expect = 5e-43 Identities = 397/588 (68%), Gaps = 2/588 (0%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||| | || ||||| || ||||||||| |||| || |||| ||||| Sbjct 1004 ATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 945 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||||||||||||||||| ||||||||||| ||||| ||||| | || || || Sbjct 944 GAGATTATTGCCAATGATCAGGGTAACAGAACCACTCCCAGCTATGTGGCCTTTACTGAC 885 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||| | |||| ||||| || || | |||| || ||||| ||||| || Sbjct 884 ACTGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTGGCTATGAATCCAACCAACACA 825 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || |||||||| ||||| | |||||||||| ||||| ||| || |||||| | || Sbjct 824 ATCTTTGATGCCAAACGGCTCATTGGAAGAAAGTTTAACGATCCGGTTGTTCATTCTGAC 765 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA-C 550293 ||||||| |||||||||| | | | | || ||||||||| | | | || || Sbjct 764 ATGAAGCTTTGGCCTTTCAAGGTGATCAGTGACAATGGAAAACC-AAAAGTCCAGGTAGA 706 Query 550294 TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAA 550353 || |||| ||| || | ||||| |||| || || ||||| | | || Sbjct 705 GTATAAAGGCGAGACTAAGGCTTTCTATCCAGAGGAAATCTCTTCCATGGTCCTGGTTAA 646 Query 550354 AATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGT 550413 |||||| | | || || | | || || || | ||||||| || || || Sbjct 645 AATGAAGGAGATTGCTGAAGCCTACCTGGGACAGAGGGTGTCTAATGCAGTCATCACAGT 586 Query 550414 ACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGG 550473 ||||| ||||| |||||||| || | ||||| || || |||||||| || |||| Sbjct 585 TCCAGCGTATTTCAATGACTCTCAGAGACAAGCCACCAAGGATGCTGGGGTGATCTCTGG 526 Query 550474 ACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGA 550533 || ||| |||| | || ||||| || || || || || || | || || || | || Sbjct 525 GCTGAATATTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATCGCTTACGGTTTAGA 466 Query 550534 TAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||| ||| ||| | |||||||| ||||||||| ||| || Sbjct 465 TAAAGGTAAAAGAGGAGAGCGCAATGTACTTATCTTTGATCTTGGCGG 418 >seq180218 Length=724 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || || || || || || |||||||| || || || || || ||||| | Sbjct 342 ATGCTGTAATCACCGTGCCGGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGACG 401 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || || | ||||||||||| |||||||| |||||||| || ||||||||||| Sbjct 402 CAGGGACCATCTCGGGACTTAATGTCCTTCGTATCATCAATGAGCCAACTGCTGCTGCTA 461 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| ||||| ||| Sbjct 462 TTGCTTATGGCCTTGACAAA 481 >seq212102 Length=1117 Score = 95.1 bits (104), Expect = 1e-13 Identities = 189/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369 |||| || ||||| ||| | || || | || || ||||||| ||| ||| | | | Sbjct 505 CTCCGCTGTCTCTGGGTATTGAGACTGCAGGTGGAGTTATGACATCTCTAATCAAACGTA 564 Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429 | || || || || | || | | | | || || || || |||||||| || | | Sbjct 565 ACACCACCATCCCCTCCAAGCAGACCCAGATCTTCTCCACATACTCAGATAACCAGCCAG 624 Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489 ||| ||||| | ||||| || || ||| | || || || || |||| || | Sbjct 625 GTGTCCTGATTCAGGTGTTTGAGGGTGAGAGAGCCATGACCAAGGACAACAATCTCCTAG 684 Query 552490 GTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549 | | ||| | | |||||| ||||||||||| ||||| ||||| || | || || | Sbjct 685 GAAAGTTTGAACTCTCAGGTATCCCTCCTGCTCCCCGTGGTGTACCTCAGGTGGAGGTGA 744 Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 | || || |||||||||||||| ||| |||||||| |||| Sbjct 745 CCTTTGACATCGATGCCAATGGCATTCTGAATGTGTCTGC 784 >seq178611 Length=5228 Score = 86.0 bits (94), Expect = 5e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 550418 GCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTT 550477 || || || || ||||| || |||||||| || || ||||||||| ||| |||| || Sbjct 295 GCTTACTTCAACGACTCCCAGCGTCAAGCCACCAAGGATGCTGGAACCATTTCTGGGCTA 236 Query 550478 AATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || || ||||| || ||||||||||| || |||| ||||| || || ||| Sbjct 235 AATGTGTTGCGCATCATCAACGAGCCTACTGCTGCAGCCATTGCTTATGGCCTAGACAAA 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4013529065073110