Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq269824 192 5e-43
seq180218 109 4e-18
seq212102 95.1 1e-13
seq178611 86.0 5e-11
>seq269824
Length=1075
Score = 192 bits (212), Expect = 5e-43
Identities = 397/588 (68%), Gaps = 2/588 (0%)
Strand=Plus/Minus
Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054
|| ||||| ||| | || ||||| || ||||||||| |||| || |||| |||||
Sbjct 1004 ATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 945
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
|| ||||||||||||||||| ||||||||||| ||||| ||||| | || || ||
Sbjct 944 GAGATTATTGCCAATGATCAGGGTAACAGAACCACTCCCAGCTATGTGGCCTTTACTGAC 885
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174
||||| | |||| ||||| || || | |||| || ||||| ||||| ||
Sbjct 884 ACTGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTGGCTATGAATCCAACCAACACA 825
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
|| |||||||| ||||| | |||||||||| ||||| ||| || |||||| | ||
Sbjct 824 ATCTTTGATGCCAAACGGCTCATTGGAAGAAAGTTTAACGATCCGGTTGTTCATTCTGAC 765
Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA-C 550293
||||||| |||||||||| | | | | || ||||||||| | | | || ||
Sbjct 764 ATGAAGCTTTGGCCTTTCAAGGTGATCAGTGACAATGGAAAACC-AAAAGTCCAGGTAGA 706
Query 550294 TCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAA 550353
|| |||| ||| || | ||||| |||| || || ||||| | | ||
Sbjct 705 GTATAAAGGCGAGACTAAGGCTTTCTATCCAGAGGAAATCTCTTCCATGGTCCTGGTTAA 646
Query 550354 AATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGT 550413
|||||| | | || || | | || || || | ||||||| || || ||
Sbjct 645 AATGAAGGAGATTGCTGAAGCCTACCTGGGACAGAGGGTGTCTAATGCAGTCATCACAGT 586
Query 550414 ACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGG 550473
||||| ||||| |||||||| || | ||||| || || |||||||| || ||||
Sbjct 585 TCCAGCGTATTTCAATGACTCTCAGAGACAAGCCACCAAGGATGCTGGGGTGATCTCTGG 526
Query 550474 ACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGA 550533
|| ||| |||| | || ||||| || || || || || || | || || || | ||
Sbjct 525 GCTGAATATTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATCGCTTACGGTTTAGA 466
Query 550534 TAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|||| ||| ||| | |||||||| ||||||||| ||| ||
Sbjct 465 TAAAGGTAAAAGAGGAGAGCGCAATGTACTTATCTTTGATCTTGGCGG 418
>seq180218
Length=724
Score = 109 bits (120), Expect = 4e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| ||||| || || || || || || |||||||| || || || || || ||||| |
Sbjct 342 ATGCTGTAATCACCGTGCCGGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGACG 401
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| || || | ||||||||||| |||||||| |||||||| || |||||||||||
Sbjct 402 CAGGGACCATCTCGGGACTTAATGTCCTTCGTATCATCAATGAGCCAACTGCTGCTGCTA 461
Query 550518 TTGCATATGGACTTGATAAA 550537
|||| ||||| ||||| |||
Sbjct 462 TTGCTTATGGCCTTGACAAA 481
>seq212102
Length=1117
Score = 95.1 bits (104), Expect = 1e-13
Identities = 189/280 (68%), Gaps = 0/280 (0%)
Strand=Plus/Plus
Query 552310 CTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAA 552369
|||| || ||||| ||| | || || | || || ||||||| ||| ||| | | |
Sbjct 505 CTCCGCTGTCTCTGGGTATTGAGACTGCAGGTGGAGTTATGACATCTCTAATCAAACGTA 564
Query 552370 ATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTG 552429
| || || || || | || | | | | || || || || |||||||| || | |
Sbjct 565 ACACCACCATCCCCTCCAAGCAGACCCAGATCTTCTCCACATACTCAGATAACCAGCCAG 624
Query 552430 CTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG 552489
||| ||||| | ||||| || || ||| | || || || || |||| || |
Sbjct 625 GTGTCCTGATTCAGGTGTTTGAGGGTGAGAGAGCCATGACCAAGGACAACAATCTCCTAG 684
Query 552490 GTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549
| | ||| | | |||||| ||||||||||| ||||| ||||| || | || || |
Sbjct 685 GAAAGTTTGAACTCTCAGGTATCCCTCCTGCTCCCCGTGGTGTACCTCAGGTGGAGGTGA 744
Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
| || || |||||||||||||| ||| |||||||| ||||
Sbjct 745 CCTTTGACATCGATGCCAATGGCATTCTGAATGTGTCTGC 784
>seq178611
Length=5228
Score = 86.0 bits (94), Expect = 5e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 550418 GCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTT 550477
|| || || || ||||| || |||||||| || || ||||||||| ||| |||| ||
Sbjct 295 GCTTACTTCAACGACTCCCAGCGTCAAGCCACCAAGGATGCTGGAACCATTTCTGGGCTA 236
Query 550478 AATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537
||||| | || || ||||| || ||||||||||| || |||| ||||| || || |||
Sbjct 235 AATGTGTTGCGCATCATCAACGAGCCTACTGCTGCAGCCATTGCTTATGGCCTAGACAAA 176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4013529065073110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |