Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq211158 138 9e-28 seq90574 105 5e-18 seq90573 105 5e-18 >seq211158 Length=742 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| |||| ||| || |||||||| || || || | ||||||||||||||| || || Sbjct 557 AGCCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 498 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || || || | |||||| |||||||| || ||||| ||||| | Sbjct 497 ACTCCCAGACCCATATCGCCTGAGCGCTGGTACAGCTGACATGACAGCTCGCCGTCATGC 438 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| |||||||| | || ||| || ||||| || |||||||| Sbjct 437 ACGTAGAACTGACAGAGGGCGTGACATGGAGGCAGCGCCATGAG 394 >seq90574 Length=499 Score = 105 bits (116), Expect = 5e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||||||||||||||| | ||| ||||||| ||| |||||| ||||| || ||| Sbjct 269 TTGAGCTCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAAAGGTCTGTTCTTCTCTGGG 328 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTG 112202 ||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct 329 ATGGAAAACCACGTCTTCCTGCCCATGATCACCACATTCTG 369 >seq90573 Length=6224 Score = 105 bits (116), Expect = 5e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||||||||||||||| | ||| ||||||| ||| |||||| ||||| || ||| Sbjct 231 TTGAGCTCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAAAGGTCTGTTCTTCTCTGGG 172 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTG 112202 ||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct 171 ATGGAAAACCACGTCTTCCTGCCCATGATCACCACATTCTG 131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 111860 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTATGGGAGAAAAGTGTCGCACGCAA 111919 |||||| || |||||||||| | || || || | | ||||| || ||||| ||| ||| Sbjct 1498 ACTCTGCCAATAGACGATATTTGTCCAGGCTGATTTCAGGGAGGAACGTGTCACACTCAA 1439 Query 111920 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCC 111978 | ||| || | || ||||| ||||| ||| | ||||||||||||||||| | |||| Sbjct 1438 ACTGCTTCAGGATTTGTGTGACGAACAGTCTCCTGGTCCCCGGGCTCTCCATAAACTCC 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407132859730247