Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq285305 269 5e-67 seq237828 196 9e-45 seq292436 192 1e-43 seq251807 129 1e-24 seq178749 107 4e-18 seq12009 102 2e-16 seq176571 91.5 3e-13 >seq285305 Length=1559 Score = 269 bits (298), Expect = 5e-67 Identities = 723/1096 (66%), Gaps = 27/1096 (2%) Strand=Plus/Minus Query 213119 CCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGG 213178 ||||||||| |||| | |||||| ||||| || || |||| |||| | ||||| Sbjct 1535 CCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGT 1476 Query 213179 GCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAA 213238 ||| ||||| |||||| |||||| ||||| ||||| |||||||||||| || ||||| Sbjct 1475 GCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAA 1416 Query 213239 TATCTCCCTGTTGAGCTTCTTGGCCTCTGGG------GACGTGAAGGGCATCATCATGCG 213292 |||| |||||||| || ||||||||| ||| | | |||||| || Sbjct 1415 AATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGAT--- 1359 Query 213293 TTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 ||| | || |||| || ||||| ||||| ||||| || ||||| | | ||| || Sbjct 1358 ---GAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGA 1302 Query 213353 CTT-GGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGG 213411 ||| ||| || || ||||| |||||| ||||||||||||||| ||||| | Sbjct 1301 CTTCTCAGC-TTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCA 1243 Query 213412 TGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCA 213471 |||||||| || |||||||| | | | | | | || | | | || | Sbjct 1242 CAATTACTTTGGTCACTTGGGCCAGTT--TTTTAAAGTCAAAAGTCCGCTCAGGGGTG-A 1186 Query 213472 CAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGT 213531 | || || |||||| ||||| || || || |||||||| | | |||| Sbjct 1185 CGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGT 1126 Query 213532 ACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTG 213591 | || | ||||| ||||| || || |||||| ||||||||| || ||||| ||||| Sbjct 1125 ATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGC 1066 Query 213592 ACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACA 213651 ||| |||| | || |||||||||||||| || | ||||| ||| ||||||| Sbjct 1065 TCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGAC- 1007 Query 213652 CCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT 213709 || || |||| ||| | | | ||||| ||||| ||| |||| || | | Sbjct 1006 TCAATA-ATGGCATACCACACCTGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCT 948 Query 213710 AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG 213769 ||| || | |||||| | | || || | |||||| | |||||| || || Sbjct 947 ---CTCATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGG 891 Query 213770 ACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAG 213829 ||| |||||||| || |||||| || | ||||||| |||||| || Sbjct 890 ACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAG 831 Query 213830 GTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 ||| |||| |||||| || ||| ||||| |||| || ||| ||| || | ||| Sbjct 830 GTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTT 771 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 || ||| || | || || || | || ||||||||||||| ||| ||||| || Sbjct 770 CTTCTTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAA 711 Query 213950 GGCGCCCGGCCTC---TTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCG 214006 ||| || || ||| ||||| |||||||| || | ||| ||||| | | | Sbjct 710 GGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCT 651 Query 214007 CAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGC 214066 ||| | ||| || |||||||| || | |||||||| || || || || |||| | Sbjct 650 CAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGA 591 Query 214067 CCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCG 214126 || | | ||| | | | || || || || || | |||||||| | |||||| | Sbjct 590 TCTGATGCAGCTGACAGCCACACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTG 531 Query 214127 CCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCT 214186 | ||| || || ||||| | |||||||| || | | | |||| ||||||||| Sbjct 530 CTTCAGCGTGTCATAAATGCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCT 471 Query 214187 CGAGAGCTGGGGCCTG 214202 || ||||| |||||| Sbjct 470 GGACAGCTGAGGCCTG 455 >seq237828 Length=1102 Score = 196 bits (216), Expect = 9e-45 Identities = 182/230 (79%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 241403 CACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCG 241462 |||||||| || ||| | || |||||||||||||||||| |||||||| || || || Sbjct 518 CACATGTGTCAT--GACTTTCTTTTTGAGTTGGGCCACCTGCTCCCGCAGCACAGAAGCC 461 Query 241463 GTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCG 241522 || || |||||||| |||||||| | ||| | || ||||| || |||||||| || ||| Sbjct 460 GTGTTTGACAGTCCAGCGTTGTCTGTCTTCAACAGTTTCACCTTGTCCTCCAGGCGAGCG 401 Query 241523 ATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTA 241582 ||||| ||||| || ||| || ||||| | |||||||| ||||||| || | ||| Sbjct 400 ATGCGCTCCAGCTTCCGCTTCCGACATTTAGAGGCTGCCAGTCGGTTCCTCAGCCGCTTG 341 Query 241583 CGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACTTGGG 241632 || ||||| ||||||||||||||||||||||| |||| || ||| |||| Sbjct 340 CGCTCCGCTTTGATGCGTTCCTGGTCCTCCATATCGACGGGGGACATGGG 291 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 ||| |||||||||||||||| | |||||||| || || || || || ||||| || |||| Sbjct 501 TCTTTTTGAGTTGGGCCACCTGCTCCCGCAGCACAGAAGCCGTGTTTGACAGTCCAGCGT 442 Query 238986 TATCAGACTTGAGCA--------TTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||| | || || |||||||| || |||||||| |||||||| Sbjct 441 TGTCTGTCTTCAACAGTTTCACCTTGTCCTCCAGGCGAGCGATGCGCTCCAGCTT 387 >seq292436 Length=1907 Score = 192 bits (212), Expect = 1e-43 Identities = 192/246 (78%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTC 241446 |||||||||| || ||||||| || |||| | ||||||||| |||||||| || || Sbjct 1621 GCTGACAGCCGCTGCTCACATGTGTCA--GGACTTTCTGTTTGAGCTGGGCCACTTGATC 1678 Query 241447 CCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTT 241506 ||| || || ||||| || |||| || || |||||||| ||| | || ||||| || Sbjct 1679 CCGGAGCACCGACGCTGTGCTGGAGAGACCCGCGTTGTCGTTCTTCAAAACTTTCACCTT 1738 Query 241507 CTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCG 241566 ||||||||| ||||||||||||||||| |||||| ||||||||||| ||||| | || Sbjct 1739 CTCCTCCAGACGCGCGATGCGTTCCAGCTTGCGCTTCCGGCATTTGGTCGCTGCTAGCCG 1798 Query 241567 GTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||| | | ||||| || ||||||||||| | |||||| ||||| ||||||||| || Sbjct 1799 GTTTCTCATCCTCTTGCGCTCCGCCTTGATCCTCTCCTGGGACTCCAAGTCGATCGGGGA 1858 Query 241627 C-TTGG 241631 | |||| Sbjct 1859 CATTGG 1864 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| |||||||| | ||||| || || ||||| || |||| |||||||||| Sbjct 1654 TCTGTTTGAGCTGGGCCACTTGATCCCGGAGCACCGACGCTGTGCTGGAGAGACCCGCGT 1713 Query 238986 TATC--------AGACTTGAGCATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||| | ||||||||||| |||||||||||||||||||| Sbjct 1714 TGTCGTTCTTCAAAACTTTCACCTTCTCCTCCAGACGCGCGATGCGTTCCAGCTT 1768 >seq251807 Length=1301 Score = 129 bits (142), Expect = 1e-24 Identities = 174/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 241390 CTGACAGCC-TTGGC-ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCC 241447 ||| ||||| |||| ||||| | || ||||| ||||||||| || || ||||| ||| Sbjct 65 CTGGCAGCCATTGGTGACATGA--CTCATGACCTTCTGTTTGAGCTGAGCGACCTGCTCC 122 Query 241448 CGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTC 241507 | ||| | || ||||| || ||| ||| ||| | ||| || |||||||| ||| Sbjct 123 CTCAGCATGGCAGCGGTGGAGGCCAGGTCTGAGTTTTGGCTCTTCAGGACCTTCACCTTC 182 Query 241508 TCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGG 241567 |||||||||| || ||| |||||||| || ||| || || |||| || || | |||| Sbjct 183 TCCTCCAGCCTCGAGATCCGTTCCAGCTTCCGCTTACGACACTTGGACGCAGCGATGCGG 242 Query 241568 TTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || ||||| | || ||||| || ||||| || ||||| ||||| ||| || || || Sbjct 243 TTGCGGAGCTTTTTGCGTTCAGCTTTGATTCGCTCCTGCGTCTCCAGGTCAATTGGGGA 301 >seq178749 Length=757 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||||||| ||||||||||| || || ||||| | || |||| || Sbjct 310 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCTTC 369 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || || ||||| || |||||||||||||| |||||||| || ||||| || Sbjct 370 AGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGGC 428 >seq12009 Length=4249 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || || |||||||||| | ||| | ||| ||||||| ||| ||| Sbjct 4085 CTGAAACTCTCCAGAGAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATGGA 4026 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| || || ||||| |||||| ||||||||||||||| |||| || ||||| Sbjct 4025 CTCGTTGTTGCCAAGTATCTGGGCAGTGGAGGCTGTGGGCATGGGGGCCATGAGCAGACT 3966 Query 213038 GTTCCTCACTCCGTGC 213053 ||||||||| || ||| Sbjct 3965 GTTCCTCACACCATGC 3950 Score = 98.7 bits (108), Expect = 2e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| ||||||||||||||||| |||||| || |||||| ||||| ||||| ||| Sbjct 3094 GTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGG 3035 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| | ||||||||||||||||| || | || || ||| ||| Sbjct 3034 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGT 2975 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCT 213694 ||| | | || | ||| || | | ||||| ||||| ||||| Sbjct 2974 GACTCGATGATGGCGTGCCACAGTTGCTGAGCCTTCACCACACGCCT 2928 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 213192 GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||||||||| |||| ||||||||||||||||||||| ||||| |||| ||||| Sbjct 3631 GCCAGCTCGCAGCTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCAAAGATCTGGATGTTG 3572 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTGGAACACATCAGCCAG 213310 ||| || |||||| || ||| ||| | | ||| | ||| | |||||||| Sbjct 3571 AGCAACTGGGCCTCCTGGCTTTCGAATGGGTAAC-GCATAAGGATGAAGGCGTCAGCCAG 3513 Query 213311 CCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGAC 213353 ||||| || ||||| || || || ||||| | ||||||| Sbjct 3512 ACCCTGCACTCCGATTCCAATTGGCCTGTGGCGTTTGTTAGAC 3470 >seq176571 Length=1504 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| ||||| ||||||| ||||||||||| Sbjct 1149 CTGGTACTCGCCCACACGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTC 1208 Query 47899 CATGAAGAGGAAGGGGTT 47916 ||||||| ||||||||| Sbjct 1209 CATGAAGTCGAAGGGGTT 1226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928061221781760