Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 257 3e-63
seq178749 123 5e-23
seq12009 96.9 6e-15
>seq285305
Length=1559
Score = 257 bits (284), Expect = 3e-63
Identities = 698/1056 (66%), Gaps = 32/1056 (3%)
Strand=Plus/Minus
Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTG 221430
||||| |||||||| |||| | ||||| | |||| | | ||||| |||||
Sbjct 1490 GTACGTCTCGTAGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTA 1431
Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA--GGGC 221488
|||||| |||||||| ||| ||||||| | || ||||| || | | || |||
Sbjct 1430 GTAGATTGTCTCAAAAATCTGGATGTTGAGCCGCTGAGCCTCTGG-GCTTTCAAACGGGT 1372
Query 221489 ATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGT 221548
| ||||| || ||| |||| |||| ||| || || ||||| ||||| ||||||||
Sbjct 1371 A-ACGCATCAGGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGA 1313
Query 221549 CTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTG 221608
| | ||||||| | ||||| ||||| || || ||||||| |||||| | |||||
Sbjct 1312 CGCTTGTTGGACTTCTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTC 1253
Query 221609 AGGTT---CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665
||||| || | || ||||| ||| | || ||| || || || |||
Sbjct 1252 AGGTTTCTCACA---ATTACTTTGGTCACTTGGGCCAGTTT-------TTTAAAGTCAAA 1203
Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725
|||| || |||||| | | | | || || || | | ||||| |||||
Sbjct 1202 AGTCCGC--TC----AGGGGTGACGTACATG--TTGAGAGCGATGGACGCCAGATTACAG 1151
Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785
|| |||||||| |||| | |||| || | | |||||||| ||||| || ||||| |||
Sbjct 1150 ACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTG 1091
Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845
||||| || || | | || || ||| | ||| ||||| ||||||||||| |
Sbjct 1090 ATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAC 1031
Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904
|| || || || ||| | | | | ||| | ||| | | ||| || ||||
Sbjct 1030 GGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCTG-CTGAGCCTTCAC 972
Query 221905 CGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTC 221964
| | |||||| ||||| ||| |||| ||| ||||| ||||||| ||
Sbjct 971 CACGCGCTTGACCTTGCCCTCCCTCT---CATATTTGGTGTAGAGAGCCTCAAACTCCTC 915
Query 221965 ACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTT 222024
|| | ||||||||| || |||||| | |||||||||||| ||||| | |||
Sbjct 914 CCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTT 855
Query 222025 GTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084
| || || |||| |||||||||||| ||||||||||| | | || || |||||||
Sbjct 854 GCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGC 795
Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144
| ||||||||| ||| |||| ||| |||| ||||| || || || | ||| ||
Sbjct 794 TCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATG 735
Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC-CA 222203
|||||||||||| || | ||| | || ||||||| ||||||||| ||||| || || |
Sbjct 734 CCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTA 675
Query 222204 TCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263
|| | || |||| | | | || | || || || ||||| || |||||||
Sbjct 674 TCGT-GCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGG 616
Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGG 222323
|||| ||||| ||| | || | | ||| ||| || ||||| || || |
Sbjct 615 TGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCCG 556
Query 222324 CGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCT 222383
| ||| ||||| | |||||| ||| || ||||| ||||| || || ||| |
Sbjct 555 CTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCGT 496
Query 222384 CCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419
|||| | | ||||| || || |||| |||||
Sbjct 495 CCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAG 460
>seq178749
Length=757
Score = 123 bits (136), Expect = 5e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
|| ||||| |||| ||||| || ||||||||||| ||||| ||| ||||| || ||
Sbjct 443 GGAGAGCGCGTGGTGGCCTTCGCCGCTGTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCC 384
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992
|||||||||||||| ||| ||| || |||||||| ||| ||| ||||||||||||
Sbjct 383 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTC 324
Query 25993 ATCAGCAGGGACGAGG 26008
|||||||| |||||||
Sbjct 323 ATCAGCAGAGACGAGG 308
>seq12009
Length=4249
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099
|||||| ||||| ||||||||||| || || || ||||||| || |||||| ||
Sbjct 2595 CATGAACAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCCTCTGCTCTTCTTT 2536
Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159
|| |||||||| ||| ||||| |||||||| | ||| |||||||||||||| ||
Sbjct 2535 ACCTGTGTTTTTCTTCAACTCCAAGAACTCAAACACATCAAAATGCCACGGCTCCAGGTA 2476
Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182
|| || | || ||||||| ||
Sbjct 2475 CACAGCGAAGGCCCCGGGTCTCT 2453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 925383239252160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |