Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq285305 257 3e-63 seq178749 123 5e-23 seq12009 96.9 6e-15 >seq285305 Length=1559 Score = 257 bits (284), Expect = 3e-63 Identities = 698/1056 (66%), Gaps = 32/1056 (3%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTG 221430 ||||| |||||||| |||| | ||||| | |||| | | ||||| ||||| Sbjct 1490 GTACGTCTCGTAGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTA 1431 Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA--GGGC 221488 |||||| |||||||| ||| ||||||| | || ||||| || | | || ||| Sbjct 1430 GTAGATTGTCTCAAAAATCTGGATGTTGAGCCGCTGAGCCTCTGG-GCTTTCAAACGGGT 1372 Query 221489 ATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGT 221548 | ||||| || ||| |||| |||| ||| || || ||||| ||||| |||||||| Sbjct 1371 A-ACGCATCAGGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGA 1313 Query 221549 CTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTG 221608 | | ||||||| | ||||| ||||| || || ||||||| |||||| | ||||| Sbjct 1312 CGCTTGTTGGACTTCTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTC 1253 Query 221609 AGGTT---CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665 ||||| || | || ||||| ||| | || ||| || || || ||| Sbjct 1252 AGGTTTCTCACA---ATTACTTTGGTCACTTGGGCCAGTTT-------TTTAAAGTCAAA 1203 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 |||| || |||||| | | | | || || || | | ||||| ||||| Sbjct 1202 AGTCCGC--TC----AGGGGTGACGTACATG--TTGAGAGCGATGGACGCCAGATTACAG 1151 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || |||||||| |||| | |||| || | | |||||||| ||||| || ||||| ||| Sbjct 1150 ACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTG 1091 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 ||||| || || | | || || ||| | ||| ||||| ||||||||||| | Sbjct 1090 ATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAC 1031 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || || || || ||| | | | | ||| | ||| | | ||| || |||| Sbjct 1030 GGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCTG-CTGAGCCTTCAC 972 Query 221905 CGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTC 221964 | | |||||| ||||| ||| |||| ||| ||||| ||||||| || Sbjct 971 CACGCGCTTGACCTTGCCCTCCCTCT---CATATTTGGTGTAGAGAGCCTCAAACTCCTC 915 Query 221965 ACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTT 222024 || | ||||||||| || |||||| | |||||||||||| ||||| | ||| Sbjct 914 CCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTT 855 Query 222025 GTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084 | || || |||| |||||||||||| ||||||||||| | | || || ||||||| Sbjct 854 GCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGC 795 Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144 | ||||||||| ||| |||| ||| |||| ||||| || || || | ||| || Sbjct 794 TCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATG 735 Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC-CA 222203 |||||||||||| || | ||| | || ||||||| ||||||||| ||||| || || | Sbjct 734 CCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTA 675 Query 222204 TCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 || | || |||| | | | || | || || || ||||| || ||||||| Sbjct 674 TCGT-GCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGG 616 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGG 222323 |||| ||||| ||| | || | | ||| ||| || ||||| || || | Sbjct 615 TGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCCG 556 Query 222324 CGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCT 222383 | ||| ||||| | |||||| ||| || ||||| ||||| || || ||| | Sbjct 555 CTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCGT 496 Query 222384 CCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 |||| | | ||||| || || |||| ||||| Sbjct 495 CCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAG 460 >seq178749 Length=757 Score = 123 bits (136), Expect = 5e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| || ||||||||||| ||||| ||| ||||| || || Sbjct 443 GGAGAGCGCGTGGTGGCCTTCGCCGCTGTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCC 384 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 383 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTC 324 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 323 ATCAGCAGAGACGAGG 308 >seq12009 Length=4249 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||| ||||| ||||||||||| || || || ||||||| || |||||| || Sbjct 2595 CATGAACAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCCTCTGCTCTTCTTT 2536 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 || |||||||| ||| ||||| |||||||| | ||| |||||||||||||| || Sbjct 2535 ACCTGTGTTTTTCTTCAACTCCAAGAACTCAAACACATCAAAATGCCACGGCTCCAGGTA 2476 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || ||||||| || Sbjct 2475 CACAGCGAAGGCCCCGGGTCTCT 2453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925383239252160