Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq269824 190 1e-42
seq140600 100 2e-15
seq180217 86.0 4e-11
>seq269824
Length=1075
Score = 190 bits (210), Expect = 1e-42
Identities = 372/550 (68%), Gaps = 0/550 (0%)
Strand=Plus/Minus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383
|||| | |||||||||||| | || || || ||| |||||| | |||| || |||
Sbjct 1012 GAATCTCCATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATG 953
Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443
| ||||| || || ||||||||||| || ||||| ||||| || || ||||| | |
Sbjct 952 GCAAAGTGGAGATTATTGCCAATGATCAGGGTAACAGAACCACTCCCAGCTATGTGGCCT 893
Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503
||||||| ||||| || |||||||||||||| || | |||| || |||||
Sbjct 892 TTACTGACACTGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTGGCTATGAATCCAA 833
Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563
|| || || |||||||| ||| | | ||||| | || ||| | ||| | ||| |
Sbjct 832 CCAACACAATCTTTGATGCCAAACGGCTCATTGGAAGAAAGTTTAACGATCCGGTTGTTC 773
Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623
| ||||| ||| | ||||||||| |||||||| | || ||| |||||| | |
Sbjct 772 ATTCTGACATGAAGCTTTGGCCTTTCAAGGTGATCAGTGACAATGGAAAACCAAAAGTCC 713
Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
| | | | ||| || ||||| || | || || |||| ||||| |||||
Sbjct 712 AGGTAGAGTATAAAGGCGAGACTAAGGCTTTCTATCCAGAGGAAATCTCTTCCATGGTCC 653
Query 474684 TAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743
| | |||||||| | | || | || || ||||| || || ||||||| |
Sbjct 652 TGGTTAAAATGAAGGAGATTGCTGAAGCCTACCTGGGACAGAGGGTGTCTAATGCAGTCA 593
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
| || |||||||| ||||| ||||| ||||| | ||||| || || ||||| || |
Sbjct 592 TCACAGTTCCAGCGTATTTCAATGACTCTCAGAGACAAGCCACCAAGGATGCTGGGGTGA 533
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
| | || || ||| || | | || || || || || |||||||| || | ||||| |
Sbjct 532 TCTCTGGGCTGAATATTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATCGCTTACG 473
Query 474864 GTCTTGATAA 474873
|| | |||||
Sbjct 472 GTTTAGATAA 463
>seq140600
Length=1543
Score = 100 bits (110), Expect = 2e-15
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
||||||||||||| | || || || ||||| | || || | ||| | ||| ||
Sbjct 355 TGAAGGTGAAAGAGCCATGACCAAGGACAATAATATCCTGGGCAAGTTTGAGCTTACTGG 296
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
|||||| ||||||||||||||||| ||||| ||||| || || ||||| |||||||| ||
Sbjct 295 TATTCCACCTGCTCCCAGAGGAGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 236
Query 476152 TGGTATTCTTAAT 476164
|| ||||| |||
Sbjct 235 CGGCATTCTCAAT 223
>seq180217
Length=942
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|||||||| ||||| | || ||||| ||| ||||||| || | || | || |||
Sbjct 473 GCAATTGGCATTGACCTGGGCACTACCTACTCCTGTGTAGGAGTGTTTCAGCACGGCAAA 414
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || || || ||||| |||||||| || || || || || |||||| | ||||||
Sbjct 413 GTCGAGATCATCGCCAACGACCAAGGAAACAGGACCACGCCCAGTTATGTTGCCTTTACT 354
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
|| ||||| || ||||||||||| || ||
Sbjct 353 GACACTGAGAGGCTGATTGGAGATGCAGCCAA 322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3255390571719572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |