Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq269824 190 1e-42 seq140600 100 2e-15 seq180217 86.0 4e-11 >seq269824 Length=1075 Score = 190 bits (210), Expect = 1e-42 Identities = 372/550 (68%), Gaps = 0/550 (0%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | |||||||||||| | || || || ||| |||||| | |||| || ||| Sbjct 1012 GAATCTCCATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATG 953 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || ||||||||||| || ||||| ||||| || || ||||| | | Sbjct 952 GCAAAGTGGAGATTATTGCCAATGATCAGGGTAACAGAACCACTCCCAGCTATGTGGCCT 893 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| ||||| || |||||||||||||| || | |||| || ||||| Sbjct 892 TTACTGACACTGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTGGCTATGAATCCAA 833 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | || ||| | ||| | ||| | Sbjct 832 CCAACACAATCTTTGATGCCAAACGGCTCATTGGAAGAAAGTTTAACGATCCGGTTGTTC 773 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | ||||| ||| | ||||||||| |||||||| | || ||| |||||| | | Sbjct 772 ATTCTGACATGAAGCTTTGGCCTTTCAAGGTGATCAGTGACAATGGAAAACCAAAAGTCC 713 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | | ||| || ||||| || | || || |||| ||||| ||||| Sbjct 712 AGGTAGAGTATAAAGGCGAGACTAAGGCTTTCTATCCAGAGGAAATCTCTTCCATGGTCC 653 Query 474684 TAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | | |||||||| | | || | || || ||||| || || ||||||| | Sbjct 652 TGGTTAAAATGAAGGAGATTGCTGAAGCCTACCTGGGACAGAGGGTGTCTAATGCAGTCA 593 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || |||||||| ||||| ||||| ||||| | ||||| || || ||||| || | Sbjct 592 TCACAGTTCCAGCGTATTTCAATGACTCTCAGAGACAAGCCACCAAGGATGCTGGGGTGA 533 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | | || || ||| || | | || || || || || |||||||| || | ||||| | Sbjct 532 TCTCTGGGCTGAATATTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATCGCTTACG 473 Query 474864 GTCTTGATAA 474873 || | ||||| Sbjct 472 GTTTAGATAA 463 >seq140600 Length=1543 Score = 100 bits (110), Expect = 2e-15 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||||||| | || || || ||||| | || || | ||| | ||| || Sbjct 355 TGAAGGTGAAAGAGCCATGACCAAGGACAATAATATCCTGGGCAAGTTTGAGCTTACTGG 296 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| ||||||||||||||||| ||||| ||||| || || ||||| |||||||| || Sbjct 295 TATTCCACCTGCTCCCAGAGGAGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 236 Query 476152 TGGTATTCTTAAT 476164 || ||||| ||| Sbjct 235 CGGCATTCTCAAT 223 >seq180217 Length=942 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 |||||||| ||||| | || ||||| ||| ||||||| || | || | || ||| Sbjct 473 GCAATTGGCATTGACCTGGGCACTACCTACTCCTGTGTAGGAGTGTTTCAGCACGGCAAA 414 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||| |||||||| || || || || || |||||| | |||||| Sbjct 413 GTCGAGATCATCGCCAACGACCAAGGAAACAGGACCACGCCCAGTTATGTTGCCTTTACT 354 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || ||||| || ||||||||||| || || Sbjct 353 GACACTGAGAGGCTGATTGGAGATGCAGCCAA 322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3255390571719572