Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq269824 201 1e-46 seq212102 150 2e-31 seq200202 89.7 7e-13 seq180218 89.7 7e-13 seq178611 89.7 7e-13 seq44531 84.2 3e-11 >seq269824 Length=1075 Score = 201 bits (222), Expect = 1e-46 Identities = 656/1008 (65%), Gaps = 10/1008 (1%) Strand=Plus/Minus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 |||||||| ||| | || || || ||||| |||||||| || | || ||| || Sbjct 1004 ATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 945 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 |||||||| | ||||| || || ||| | || ||||| || || |||||||| || Sbjct 944 GAGATTATTGCCAATGATCAGGGTAACAGAACCACTCCCAGCTATGTGGCCTTTACTGAC 885 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | ||| | ||| |||||||||| || || || || |||||||| || | ||| || Sbjct 884 ACTGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTGGCTATGAATCCAACCAACACA 825 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 ||||||| || || || || ||||| | |||||| ||| | || || || Sbjct 824 ATCTTTGATGCCAAACGGCTCATTGGAAGAAAGTTTAACGATCCGGTTGTTCATTCTGAC 765 Query 195542 ATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTT 195601 || ||| ||| ||| | ||| || || ||| || || || | | | || Sbjct 764 ATGAAGCTTTGGCCTT-TCAAGGTGATCA--GTGACAATGGAAAACCAAAAGTCCAGGTA 708 Query 195602 GAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATT 195661 || | | | || |||| || || ||| || ||||| || || ||||| || || Sbjct 707 GAGTATAAAGGCGAGACTAAGGCTTTCTATCCAGAGGAAATCTCTTCCATGGTCCTGGTT 648 Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 || |||||||||| ||| ||| | | | |||| | | ||| ||||||| | || Sbjct 647 AAAATGAAGGAGATTGCTGAAGCCTACCTGGGACAGAGGGTGTCTAATGCAGTCATCACA 588 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || || |||| ||| || || |||| || || ||||| |||| | || | Sbjct 587 GTTCCAGCGTATTTCAATGACTCTCAGAGACAAGCCACCAAGGATGCTGGGGTGATCTCT 528 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || || ||| || || ||||| || || ||||| || || || ||||| ||| | Sbjct 527 GGGCTGAATATTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATCGCTTACGGTTTA 468 Query 195842 GACAA-GAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 || || | || || || || |||||| | ||||||||||| || || || || || Sbjct 467 GATAAAGGTAAAAGAGGA-GAGCGCAATGTACTTATCTTTGATCTTGGCGGAGGCACCTT 409 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 ||| || || | || | ||||| | |||||| || || || || | || || || || Sbjct 408 TGACGTGTCCATCCTGACCATTGAGGATGGTATCTTTGAGGTGAAATCCACCGCGGGAGA 349 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA-TGCACG-TCTTCTCCGTCATTTGTCTGATGAG 196018 || || || ||||| ||||| || || || | | || ||||| || || Sbjct 348 CACACACCTTGGTGGGGAAGACTTTGACAACAGGATGGTCNAACCACTTTGT-AGAGGAA 290 Query 196019 TTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGG 196078 || |||| | ||||| || || |||| || || | | |||| | Sbjct 289 TTTAAAAGAAAACACAAGAAGGACATCAGCCAAAATAAGAGAGCAGTGAGAAGGCTGCGT 230 Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138 || || ||||| | || || |||| || || || | | || | | | ||||| Sbjct 229 ACAGCTTGTGAGAGAGCGAAGAGAACCCTGTCCTCCAGCACCCAGGCCAGCATCGAGATC 170 Query 196139 GATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198 || || | ||||| ||||| |||||||| || | || || | ||||| ||||| ||| Sbjct 169 GACTCTCTCTTTGAGGGAATCGACTTCTACACCTCCATCACGAGGGCACGCTTTGAGGAG 110 Query 196199 TTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT-CGTGACGC 196257 | |||||||| | || ||| |||| || |||| | ||| ||| | || || Sbjct 109 CTCAACTCTGAACTCTTCAGGGGAACACTGGAGCCAGTTG-AGAAGGCCTTACAAGATGC 51 Query 196258 AAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 ||| |||||||||| ||| | |||| || ||||| || || || || Sbjct 50 CAAGCTGGATAAGTCCAAGATCCATGAGATCGTCCTGGTTGGTGGCTC 3 >seq212102 Length=1117 Score = 150 bits (166), Expect = 2e-31 Identities = 490/765 (64%), Gaps = 35/765 (5%) Strand=Plus/Plus Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 |||||||| || | ||||| || || |||||||| || | || || | ||||| ||| Sbjct 133 GAGATTGACTCTCTCTTTGAGGGCATCGACTTCTACACCTCCATCACGAGGGCACGCTTT 192 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT-CG 196251 || ||| | |||||||| | || ||| |||| || |||||| ||| ||| | Sbjct 193 GAGGAGCTCAACTCTGAGCTCTTCAGGGGAACACTGGAGCCAGTTGAA-AAGGCCTTACA 251 Query 196252 TGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAA---- 196307 || || ||| |||||||||| ||| | |||| || ||||| || || || || | Sbjct 252 AGATGCCAAGCTGGATAAGTCCAAGATCCATGAGATCGTCCTGGTTGGTGGCTCCANNNN 311 Query 196308 ----------------------CCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTT 196344 | | ||||| || || || || | ||| | | ||| Sbjct 312 NNNNNNNNNNNNNNNNNNNNNNCAAGAATTCCCAAAATCCAGAAGCT-CTTGCAGGACTT 370 Query 196345 CTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 ||| || || ||| | ||||| | |||||||| ||||||||||| || ||||| || Sbjct 371 CTTTAACGGTAGAGACCTGAACAAGAGTATCAACCCAGATGAAGCAGTGGCATATGGGGC 430 Query 196405 GGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATA-ATAACGTCCA---AGATCTTC 196460 || || |||||||| || ||| |||| | || | | || ||||| Sbjct 431 AGCAGTCCAGGCTGCAATCCTCATGGGTGAT-ACTTCAGAGAATGTCCAGNNNNNNNNNN 489 Query 196461 TGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTA 196520 || || || || | || |||||| |||| || || ||||| |||||||| Sbjct 490 NNNNNNNNGACGTGGCTCCGCTGTCTCTGGGTATTGAGACTGCAGGTGGAGTTATGACAT 549 Query 196521 AAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATT 196580 | || | | ||||| || || || | ||| || || |||| || || || | Sbjct 550 CTCTAATCAAACGTAACACCACCATCCCCTCCAAGCAGACCCAGATCTTCTCCACATACT 609 Query 196581 CCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGG 196640 | ||||| || |||||||| | ||||| || | ||| || || | || | |||| Sbjct 610 CAGATAACCAGCCAGGTGTCCTGATTCAGGTGTTTGAGGGTGAGAGAGCCATGACCAAGG 669 Query 196641 ATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTC 196700 | ||| |||| || |||| || || | | || || || |||| ||| | ||||| | Sbjct 670 ACAACAATCTCCTAGGAAAGTTTGAACTCTCAGGTATCCCTCCTGCTCCCCGTGGTGTAC 729 Query 196701 CACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGG 196760 | ||| | | || ||| || || || || ||||| ||||| || || | || | || Sbjct 730 CTCAGGTGGAGGTGACCTTTGACATCGATGCCAATGGCATTCTGAATGTGTCTGCCGTGG 789 Query 196761 ACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTA 196820 | || | || ||| | || || || |||||||||||||| || || | Sbjct 790 ATAAAAGCACCGGAAAAGAAAACAAAATCACCATCACCAATGACAAGGGTCGCCTCAGCA 849 Query 196821 AGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGG 196865 | ||||| || || || ||||| |||||||| |||||||||| || Sbjct 850 AAGAGGACATAGAGCGGATGGTACAAGATGCTGAAAAGTACAAGG 894 >seq200202 Length=1384 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || || || ||||| || ||||||||||| ||| | Sbjct 398 ATGCAGATTTTTGTGAAAACACTGACGGGTAAAACCATTACCCTCGAGGTGGAGCCCAGT 457 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCAT 171968 ||||| ||||| || |||||||||| || ||||| || ||||| || Sbjct 458 GACACTATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTAT 504 >seq180218 Length=724 Score = 89.7 bits (98), Expect = 7e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 195698 ACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCG 195757 ||||| | | |||| || | || || || || ||||||| ||| || || || ||||| Sbjct 332 ACTGTAACAAATGCTGTAATCACCGTGCCGGCCTACTTCAATGACTCTCAGCGCCAGGCC 391 Query 195758 ACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAAC 195816 || || ||||| | | || |||| || || |||| || | || |||||||| ||||| Sbjct 392 ACCAAAGACGCAGGGACCATCTCGGGACTTAA-TGTCCTTCGTATCATCAATGAGCCAAC 450 Query 195817 AGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 || ||||| ||||||||||| || ||||| || Sbjct 451 TGCTGCTGCTATTGCTTATGGCCTTGACAAAAA 483 >seq178611 Length=5228 Score = 89.7 bits (98), Expect = 7e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || || ||| | || || || || || ||||| || ||| || ||| || ||| Sbjct 1370 GGAATTGATCTGGGCACCACATATTCCTGTGTGGGCATATTCCAGCATGGCAAAGTGGAG 1311 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || || | ||||||||||||||| | || || || || || ||||||||||| | | Sbjct 1310 ATCATTGCCAATGACCAAGGAAACAGGACTACACCCAGCTATGTGGCCTTTACAGACACT 1251 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || | || |||||||||| || || |||||| || |||||||| | ||| ||||| Sbjct 1250 GAGAGACTGATTGGAGATGCTGCCAAGAATCAGGTGGCCATGAACCCCACCAACACTGTA 1191 Query 195485 TTTG 195488 |||| Sbjct 1190 TTTG 1187 >seq44531 Length=239 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 91 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 32 Query 171922 GACACAATCGATAACATCAAAGCCAAGAT 171950 ||||||||||| || |||| |||||||| Sbjct 31 GACACAATCGAGAATGTCAAGGCCAAGAT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655410719524080