Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq222163 149 8e-30
seq65760 116 5e-20
seq171131 89.7 6e-12
seq12009 87.8 2e-11
seq173388 86.0 8e-11
>seq222163
Length=1444
Score = 149 bits (164), Expect = 8e-30
Identities = 154/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||||||| ||| ||| | |||||| ||||||||||||||||| | | | ||
Sbjct 863 GCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 922
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||| ||||| |||||||||| || || || ||||||| || | |
Sbjct 923 TGGTGGAGCGTTTGTTGTAGTGCGCCAGGCGCGACGCTTCTCCAGCGATGCGCTCAAAGA 982
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||||||||||||||||| ||| | |||| |||||| ||| ||| ||||
Sbjct 983 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCCGTGTCTGGGT 1042
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| ||||| |||||
Sbjct 1043 GCACCTGCTTCAGCACTTTGTA 1064
>seq65760
Length=666
Score = 116 bits (128), Expect = 5e-20
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | || ||||| |||||||||||||| | | | ||
Sbjct 246 GCTTGGCCAGCTCACCGGGCAGCAGGAGACGCACAGCGGTCTGGATCTCCCTGGAGGTGA 305
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| || |||||| | |||| || || | |
Sbjct 306 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGAGAGGCCTCACCGGCGATACGCTCAAAGA 365
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||| | || || |||||||||| ||| | |||| |||||||| ||| ||||
Sbjct 366 TGTCGCTCACGAAGGAGTTCATGATGCCCATAGCCTTGGACGAGATGCCGGTGTCAGGGT 425
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| ||||| |||||
Sbjct 426 GGACCTGCTTCAGCACTTTGTA 447
>seq171131
Length=971
Score = 89.7 bits (98), Expect = 6e-12
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 869715 CCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAA 869774
||| ||||||| ||||||||||||||||||||||| ||||||| ||||| ||| |
Sbjct 725 CCAAGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAAGCCAACACGTGAGAGATGA 666
Query 869775 AGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTG 869808
||| |||||| ||||| | || ||| |||||||
Sbjct 665 AGTAGCGCTCCTCGTCCTTCAGAGACTCCCAGTG 632
>seq12009
Length=4249
Score = 87.8 bits (96), Expect = 2e-11
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 1628169 GATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAG 1628228
||||||||||||||| ||| || | | || ||||| |||||||||||| | ||
Sbjct 3083 GATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCT 3024
Query 1628229 GTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGAT 1628288
|||| ||||||||||| ||||||||| || | ||| || || |||| | | ||| |||
Sbjct 3023 GTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGATGAT 2964
Query 1628289 GGC 1628291
|||
Sbjct 2963 GGC 2961
>seq173388
Length=2018
Score = 86.0 bits (94), Expect = 8e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||||||||||| | |||||||| ||| | ||| | |||||| | |||||||||
Sbjct 485 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 544
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295
||||| || ||||| | || ||||||||| | ||||| |||||||||||
Sbjct 545 ATGATTAAAGGCAAAACCCCGGAGGAGATCAGGAAGACATTTAACATCAA 594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6082672517475063
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |