Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq222163 149 8e-30 seq65760 116 5e-20 seq171131 89.7 6e-12 seq12009 87.8 2e-11 seq173388 86.0 8e-11 >seq222163 Length=1444 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 863 GCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 922 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||||||||| || || || ||||||| || | | Sbjct 923 TGGTGGAGCGTTTGTTGTAGTGCGCCAGGCGCGACGCTTCTCCAGCGATGCGCTCAAAGA 982 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| |||||| ||| ||| |||| Sbjct 983 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCCGTGTCTGGGT 1042 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||| ||||| Sbjct 1043 GCACCTGCTTCAGCACTTTGTA 1064 >seq65760 Length=666 Score = 116 bits (128), Expect = 5e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || ||||| |||||||||||||| | | | || Sbjct 246 GCTTGGCCAGCTCACCGGGCAGCAGGAGACGCACAGCGGTCTGGATCTCCCTGGAGGTGA 305 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| || |||||| | |||| || || | | Sbjct 306 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGAGAGGCCTCACCGGCGATACGCTCAAAGA 365 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | || || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 366 TGTCGCTCACGAAGGAGTTCATGATGCCCATAGCCTTGGACGAGATGCCGGTGTCAGGGT 425 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||| ||||| Sbjct 426 GGACCTGCTTCAGCACTTTGTA 447 >seq171131 Length=971 Score = 89.7 bits (98), Expect = 6e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 869715 CCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAA 869774 ||| ||||||| ||||||||||||||||||||||| ||||||| ||||| ||| | Sbjct 725 CCAAGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAAGCCAACACGTGAGAGATGA 666 Query 869775 AGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTG 869808 ||| |||||| ||||| | || ||| ||||||| Sbjct 665 AGTAGCGCTCCTCGTCCTTCAGAGACTCCCAGTG 632 >seq12009 Length=4249 Score = 87.8 bits (96), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 1628169 GATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCAG 1628228 ||||||||||||||| ||| || | | || ||||| |||||||||||| | || Sbjct 3083 GATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCT 3024 Query 1628229 GTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGAT 1628288 |||| ||||||||||| ||||||||| || | ||| || || |||| | | ||| ||| Sbjct 3023 GTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGATGAT 2964 Query 1628289 GGC 1628291 ||| Sbjct 2963 GGC 2961 >seq173388 Length=2018 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| ||| | ||| | |||||| | ||||||||| Sbjct 485 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 544 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||| || ||||| | || ||||||||| | ||||| ||||||||||| Sbjct 545 ATGATTAAAGGCAAAACCCCGGAGGAGATCAGGAAGACATTTAACATCAA 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6082672517475063