Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq222163 178 2e-38 seq65760 170 3e-36 seq12009 89.7 8e-12 seq173670 86.0 1e-10 >seq222163 Length=1444 Score = 178 bits (196), Expect = 2e-38 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 1485486 CTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGC 1485545 |||||| ||||| || ||||||||| |||||||||| ||| ||| | |||||| ||||| Sbjct 840 CTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGGACGGC 899 Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGC 1485605 |||||||||||| | || | ||| ||| ||| ||||| | |||||||||| || Sbjct 900 GGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGTTTGTTGTAGTGCGCCAGGCGCGACGC 959 Query 1485606 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTT 1485665 || ||||||| || | |||||||||||||||||||||||||| ||| | || Sbjct 960 TTCTCCAGCGATGCGCTCAAAGATGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTT 1019 Query 1485666 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 | |||||| ||| ||| |||||||||||||| ||||| ||||| || Sbjct 1020 GGAGGAGATCCCCGTGTCTGGGTGCACCTGCTTCAGCACTTTGTACAC 1067 >seq65760 Length=666 Score = 170 bits (188), Expect = 3e-36 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 207 TGTACTTGGTCACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 266 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| |||||||||||||| | || | ||| ||| ||||||||| | Sbjct 267 GCAGGAGACGCACAGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 326 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| |||||| | |||| || || | |||||| | || || ||||||| Sbjct 327 GAGCCAGGCGAGAGGCCTCACCGGCGATACGCTCAAAGATGTCGCTCACGAAGGAGTTCA 386 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| ||||| |||||||| ||||| |||| Sbjct 387 TGATGCCCATAGCCTTGGACGAGATGCCGGTGTCAGGGTGGACCTGCTTCAGCACTTTGT 446 Query 1485710 AAAC 1485713 | || Sbjct 447 ACAC 450 >seq12009 Length=4249 Score = 89.7 bits (98), Expect = 8e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTC 2069675 ||| || || |||||||| ||||| |||||||||||||| ||| | |||| | ||| Sbjct 4082 AAACTCTCCAGAGAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATGGACTC 4023 Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 | ||||||| || ||||| | || | ||| ||||||||| | |||| |||||| Sbjct 4022 GTTGTTGCCAAGTATCTGGGCAGTGGAGGCTGTGGGCATGGGGGCCATGAGCAG 3969 >seq173670 Length=465 Score = 86.0 bits (94), Expect = 1e-10 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 1485484 GCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACG 1485543 || ||||| |||||||| |||||||| ||||||| || ||| ||| | ||| | ||| Sbjct 3 GCTTTGGTGCCCTCTGACACGGCGTGTTTGGCCAGCTCCCCGGGCAGCAGCAGCCTCACT 62 Query 1485544 GCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-GCGCCAGGCGGCC 1485602 |||||||| | ||| | | || ||| ||| ||| ||||| || | | ||||| ||| Sbjct 63 GCGGTCTGCACCTCTCTGCTGGTGATGGTGGAGCGTTTGTT-GTACTGAGCCAGCCGGGA 121 Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || || || | || | || | || ||| || || || ||||||||||| Sbjct 122 CGCTTCTGTAGCAATCCTCTCAAACAGGTCATTCACGAAGGAGTTCATGAT 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7884531994758021