Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq269824 181 8e-40 seq180218 98.7 7e-15 >seq269824 Length=1075 Score = 181 bits (200), Expect = 8e-40 Identities = 405/605 (67%), Gaps = 6/605 (1%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT- 282333 || ||| ||| || || || | |||||| ||||||||||| ||| |||| || Sbjct 403 ACGTCAAAGGTGCCTCCGCCAAGATCAAAGATAAGTACATTGCGCTCTCC-TCTT--TTA 459 Query 282334 --TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||| | ||| || || | || || || || || || || || || |||| || | Sbjct 460 CCTTTATCTAAACCGTAAGCGATGGCTGCTGCTGTGGGCTCGTTGATGATCCTCAGAATA 519 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || || ||||| || ||||||||||| || || || || ||||| Sbjct 520 TTCAGCCCAGAGATCACCCCAGCATCCTTGGTGGCTTGTCTCTGAGAGTCATTGAAATAC 579 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || ||||| || || || |||| | || | ||| | || || || | | Sbjct 580 GCTGGAACTGTGATGACTGCATTAGACACCCTCTGTCCCAGGTAGGCTTCAGCAATCTCC 639 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||||||| | | ||| || || |||| |||||| | | ||| | || | Sbjct 640 TTCATTTTAACCAGGACCATGGAAGAGATTTCCTCTGGATAGAAAGCCTTAGTCTCGCCT 699 Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631 | ||| ||| | | | |||||| | || | || || || || |||||| Sbjct 700 TTATACTCTACCTGGACTTTTGGTTTTCCATTGTCACTGATCACCTTGAAAGGCCAAAGC 759 Query 282632 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691 ||||| || || |||||| | || ||||| | ||| ||||| | ||||| |||||| Sbjct 760 TTCATGTCAGAATGAACAACCGGATCGTTAAACTTTCTTCCAATGAGCCGTTTGGCATCA 819 Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 || || || ||||||||||| | || |||| | ||||| ||||||||||| || Sbjct 820 AAGATTGTGTTGGTTGGATTCATAGCCACTTGGTTCTTGGCAGCATCTCCAATGAGCCTC 879 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 || || || ||||| | ||||| ||||| || | ||||| |||||||| |||||| Sbjct 880 TCAGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTTCTGTTACCCTGATCATTGGCAATA 939 Query 282812 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 || || ||||| |||| || | || || |||||| | || || || | ||||||| Sbjct 940 ATCTCCACTTTGCCATGCTGGAAAACCCCAACACAAGAGTAGGTGGTGCCCAGATCAATA 999 Query 282872 CCAAT 282876 ||||| Sbjct 1000 CCAAT 1004 >seq180218 Length=724 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| ||||| ||||| |||| ||||||||||||||| ||||| || || | | ||| Sbjct 483 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGAAGGACA 424 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| || | || | ||||| ||||| ||||| || | || || || || || || Sbjct 423 TTAAGTCCCGAGATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 364 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || || || || || |||| |||||| Sbjct 363 GCCGGCACGGTGATTACAGCATTTGTTAC 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3725993035035414