Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq40391 93.3 5e-14 seq282681 82.4 1e-10 seq169311 82.4 1e-10 seq129789 82.4 1e-10 seq68397 82.4 1e-10 seq6079 82.4 1e-10 >seq40391 Length=220 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| |||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 45 TCCTCGTTAGTATAGTGGACAGTATGTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 104 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 105 CCCGACGGGGAGG 117 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||| Sbjct 45 TCCTCGTTAGTATAGTGGACAGTATGTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC 104 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 105 CCCGACGGGGAG 116 >seq282681 Length=1450 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 8662 CGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 8721 |||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||||||| Sbjct 871 CGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCG 812 Query 8722 ACGAGGAG 8729 ||| |||| Sbjct 811 ACGGGGAG 804 >seq169311 Length=2236 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 8662 CGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 8721 |||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||||||| Sbjct 2236 CGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCG 2177 Query 8722 ACGAGGAG 8729 ||| |||| Sbjct 2176 ACGGGGAG 2169 >seq129789 Length=334 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 8662 CGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 8721 |||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||||||| Sbjct 334 CGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCG 275 Query 8722 ACGAGGAG 8729 ||| |||| Sbjct 274 ACGGGGAG 267 >seq68397 Length=4143 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 8662 CGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 8721 |||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||||||| Sbjct 4143 CGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCG 4084 Query 8722 ACGAGGAG 8729 ||| |||| Sbjct 4083 ACGGGGAG 4076 >seq6079 Length=529 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 8662 CGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 8721 |||||||||||||| ||||| ||| ||||| | ||| ||||||||||||||||||||| Sbjct 409 CGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCG 350 Query 8722 ACGAGGAG 8729 ||| |||| Sbjct 349 ACGGGGAG 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650411818802160