Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq285305 172 5e-38 seq12009 122 8e-23 >seq285305 Length=1559 Score = 172 bits (190), Expect = 5e-38 Identities = 584/900 (65%), Gaps = 36/900 (4%) Strand=Plus/Minus Query 148460 CCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGG 148519 ||||||||||||||| || ||||| ||| | || |||| ||||| ||| | Sbjct 1535 CCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGT 1476 Query 148520 TCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGC 148579 |||||| | || ||||| |||||||||||||| || | ||||||| || ||||| Sbjct 1475 GCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAA 1416 Query 148580 AATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAA 148639 ||| || |||||||| || ||| |||||| |||| ||||| | | | || Sbjct 1415 AATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAA 1356 Query 148640 CGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCG 148699 ||||| || | || || || || | || || |||| ||| ||||||| | Sbjct 1355 GGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTT-CT 1297 Query 148700 CGCGCTCTCGAGC---GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCAC 148756 | ||| ||| || || ||| |||| |||||||||||||| || || | ||| | Sbjct 1296 CA-GCT-TCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAAT 1239 Query 148757 CACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTACTTG---TCATCTACGATGCATCG 148813 || || || | | | ||| || ||| || | | ||| || | | Sbjct 1238 TACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACAT 1179 Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873 ||| | ||||| || || ||||| || || ||| ||||||| || | |||| || || Sbjct 1178 GTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTCAAC 1119 Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933 ||||| | ||| ||||| ||||||||||| ||| | |||| || |||||||| || Sbjct 1118 TATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCT 1059 Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 |||||| ||||| ||||| |||||||||||| || ||||| ||| | || | || Sbjct 1058 GTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAAT 999 Query 148994 G------AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTC 149047 | || ||| | ||| | | ||| ||| | | | |||||| ||| Sbjct 998 GGCATACCACACCTGCTGAGCCTTCAC---CACGCGCTTGACCTTG---CCCTCCCTCTC 945 Query 149048 GTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT 149107 ||| || || || ||| ||| |||| || |||| ||||| || ||||| |||| Sbjct 944 ATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTC 885 Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167 | ||| ||||| || ||||| | || | ||| | |||||| || || ||||| Sbjct 884 GCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCGGG 825 Query 149168 CACCCAGAGCGCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGG 149225 | ||| || |||| | ||||| | || | |||| || || |||| |||| Sbjct 824 GATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGC--TCCTCCTTGCCCGTGTTCTTC 767 Query 149226 CGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCG 149285 ||| | | | ||| | || ||||||||||| | ||||| |||| || Sbjct 766 TTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCT 707 Query 149286 CC------CTTGCGCTTGCCGCCCTGGTCGACGTGGCGCACCATGTTGT--TAAACACTC 149337 || |||| ||||| ||||||||||||| || || |||||| ||||| ||| Sbjct 706 CCGGGTCTCTTG---TTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTC 650 >seq12009 Length=4249 Score = 122 bits (134), Expect = 8e-23 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||||| |||||||| ||||||||||||| ||||||| |||| |||| || | Sbjct 3093 TGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 3034 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||| |||||||| ||||||||||| |||||||| ||| ||||||||| Sbjct 3033 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTC 2982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481619217576360