Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 172 5e-38
seq12009 122 8e-23
>seq285305
Length=1559
Score = 172 bits (190), Expect = 5e-38
Identities = 584/900 (65%), Gaps = 36/900 (4%)
Strand=Plus/Minus
Query 148460 CCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGG 148519
||||||||||||||| || ||||| ||| | || |||| ||||| ||| |
Sbjct 1535 CCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAGGT 1476
Query 148520 TCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGC 148579
|||||| | || ||||| |||||||||||||| || | ||||||| || |||||
Sbjct 1475 GCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAA 1416
Query 148580 AATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAA 148639
||| || |||||||| || ||| |||||| |||| ||||| | | | ||
Sbjct 1415 AATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAA 1356
Query 148640 CGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCG 148699
||||| || | || || || || | || || |||| ||| ||||||| |
Sbjct 1355 GGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTT-CT 1297
Query 148700 CGCGCTCTCGAGC---GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCAC 148756
| ||| ||| || || ||| |||| |||||||||||||| || || | ||| |
Sbjct 1296 CA-GCT-TCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAAT 1239
Query 148757 CACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTACTTG---TCATCTACGATGCATCG 148813
|| || || | | | ||| || ||| || | | ||| || | |
Sbjct 1238 TACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACAT 1179
Query 148814 GTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTAC 148873
||| | ||||| || || ||||| || || ||| ||||||| || | |||| || ||
Sbjct 1178 GTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTCAAC 1119
Query 148874 GATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCT 148933
||||| | ||| ||||| ||||||||||| ||| | |||| || |||||||| ||
Sbjct 1118 TATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCT 1059
Query 148934 GTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993
|||||| ||||| ||||| |||||||||||| || ||||| ||| | || | ||
Sbjct 1058 GTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAAT 999
Query 148994 G------AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTC 149047
| || ||| | ||| | | ||| ||| | | | |||||| |||
Sbjct 998 GGCATACCACACCTGCTGAGCCTTCAC---CACGCGCTTGACCTTG---CCCTCCCTCTC 945
Query 149048 GTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT 149107
||| || || || ||| ||| |||| || |||| ||||| || ||||| ||||
Sbjct 944 ATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTC 885
Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167
| ||| ||||| || ||||| | || | ||| | |||||| || || |||||
Sbjct 884 GCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCGGG 825
Query 149168 CACCCAGAGCGCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGG 149225
| ||| || |||| | ||||| | || | |||| || || |||| ||||
Sbjct 824 GATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGC--TCCTCCTTGCCCGTGTTCTTC 767
Query 149226 CGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCG 149285
||| | | | ||| | || ||||||||||| | ||||| |||| ||
Sbjct 766 TTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCT 707
Query 149286 CC------CTTGCGCTTGCCGCCCTGGTCGACGTGGCGCACCATGTTGT--TAAACACTC 149337
|| |||| ||||| ||||||||||||| || || |||||| ||||| |||
Sbjct 706 CCGGGTCTCTTG---TTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTC 650
>seq12009
Length=4249
Score = 122 bits (134), Expect = 8e-23
Identities = 94/112 (84%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923
||||||||| |||||||| ||||||||||||| ||||||| |||| |||| || |
Sbjct 3093 TGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 3034
Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975
||||||| |||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct 3033 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTC 2982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 481619217576360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |