Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq222163 170 3e-36
seq65760 140 5e-27
seq12009 91.5 2e-12
seq87547 87.8 3e-11
>seq222163
Length=1444
Score = 170 bits (188), Expect = 3e-36
Identities = 177/229 (77%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||| ||||| |||||||||||||| || || ||| |||||||| | |||||
Sbjct 1064 TACAAAGTGCTGAAGCAGGTGCACCCA-GACACG--GGGATCTCCTCCAA---GGCCATG 1011
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||||||||||||||| | || ||||||| || || |||
Sbjct 1010 GGCATCATGAACTCGTTTGTCAACGACATCTTTGAGCGCATCGCTGGAGAAGCGTCGCGC 951
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||| ||| ||| ||| | | | ||||||||||||||||| |||
Sbjct 950 CTGGCGCACTACAACAAACGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 891
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| |||||||||| ||||||||| |||||||||||||
Sbjct 890 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 842
>seq65760
Length=666
Score = 140 bits (154), Expect = 5e-27
Identities = 169/229 (74%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||| ||||| |||||||| ||||| |||| |||| || |||| | |||
Sbjct 447 TACAAAGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC-TCGTCCAAGGCTATG 394
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || || | |||||| | || || |||| | |||||| ||||
Sbjct 393 GGCATCATGAACTCCTTCGTGAGCGACATCTTTGAGCGTATCGCCGGTGAGGCCTCTCGC 334
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||| | || |||||||||| ||| ||| | | | |||||||||||||| |||||
Sbjct 333 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGT 274
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| | ||| ||| || ||||||| ||||||||| |||||||||||||
Sbjct 273 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 225
>seq12009
Length=4249
Score = 91.5 bits (100), Expect = 2e-12
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993
||||| |||| | ||||||||| ||| | || | ||||| || ||||||| |||| |
Sbjct 3970 TGCTCATGGCCCCCATGCCCACAGCCTCCACTGCCCAGATACTTGGCAACAACGAGTCCA 4029
Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046
| |||| | ||| |||||||||||||| ||||| |||||||| || || |||
Sbjct 4030 TTGAGGCCTACACCAGCAACATCTACACCCGCCGGGTGCTCTCTGGAGAGTTT 4082
Score = 87.8 bits (96), Expect = 3e-11
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 262103 GCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTC 262162
||||| ||| | | || | || || ||||| || |||||| |||||||||||||| |
Sbjct 2961 GCCATCATCGAGTCACAGACAGAAACTGGCACACCATACATGCTCTACAAGGACGCCTGC 3020
Query 262163 AACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAG 262222
||| || |||||||||||||| ||||| |||| | | ||| ||||||||||||
Sbjct 3021 AACAGGAAGAGCAACCAGCAGAATCTGGGAACCATCAAATCCAGCAATCTGTGCACCGAG 3080
Query 262223 ATC 262225
|||
Sbjct 3081 ATC 3083
>seq87547
Length=968
Score = 87.8 bits (96), Expect = 3e-11
Identities = 88/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164
||||| | |||||| || |||| ||||| || ||| ||||||||| |||||| ||
Sbjct 705 CGGTTGATGCCGTGACGTGTGATGGCCATCAGGTGA-CCGCGGCAAGTCATGGTATCACA 647
Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216
| ||| || || ||||||| ||||||||||| |||||||||||||| |||
Sbjct 646 GAGCAGAGCCAAATGGCGGTAGTTGACATAGGAACCGTCAAAGGAGATGACG 595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7149055145470518
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |