Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq222163 170 3e-36 seq65760 140 5e-27 seq12009 91.5 2e-12 seq87547 87.8 3e-11 >seq222163 Length=1444 Score = 170 bits (188), Expect = 3e-36 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||||||||| || || ||| |||||||| | ||||| Sbjct 1064 TACAAAGTGCTGAAGCAGGTGCACCCA-GACACG--GGGATCTCCTCCAA---GGCCATG 1011 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| | || ||||||| || || ||| Sbjct 1010 GGCATCATGAACTCGTTTGTCAACGACATCTTTGAGCGCATCGCTGGAGAAGCGTCGCGC 951 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||| ||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 950 CTGGCGCACTACAACAAACGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 891 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| |||||||||| ||||||||| ||||||||||||| Sbjct 890 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 842 >seq65760 Length=666 Score = 140 bits (154), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| ||||| |||| |||| || |||| | ||| Sbjct 447 TACAAAGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC-TCGTCCAAGGCTATG 394 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| | || || |||| | |||||| |||| Sbjct 393 GGCATCATGAACTCCTTCGTGAGCGACATCTTTGAGCGTATCGCCGGTGAGGCCTCTCGC 334 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| ||||| Sbjct 333 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGT 274 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 273 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 225 >seq12009 Length=4249 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| ||| | || | ||||| || ||||||| |||| | Sbjct 3970 TGCTCATGGCCCCCATGCCCACAGCCTCCACTGCCCAGATACTTGGCAACAACGAGTCCA 4029 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||| | ||| |||||||||||||| ||||| |||||||| || || ||| Sbjct 4030 TTGAGGCCTACACCAGCAACATCTACACCCGCCGGGTGCTCTCTGGAGAGTTT 4082 Score = 87.8 bits (96), Expect = 3e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 262103 GCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTC 262162 ||||| ||| | | || | || || ||||| || |||||| |||||||||||||| | Sbjct 2961 GCCATCATCGAGTCACAGACAGAAACTGGCACACCATACATGCTCTACAAGGACGCCTGC 3020 Query 262163 AACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAG 262222 ||| || |||||||||||||| ||||| |||| | | ||| |||||||||||| Sbjct 3021 AACAGGAAGAGCAACCAGCAGAATCTGGGAACCATCAAATCCAGCAATCTGTGCACCGAG 3080 Query 262223 ATC 262225 ||| Sbjct 3081 ATC 3083 >seq87547 Length=968 Score = 87.8 bits (96), Expect = 3e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | |||||| || |||| ||||| || ||| ||||||||| |||||| || Sbjct 705 CGGTTGATGCCGTGACGTGTGATGGCCATCAGGTGA-CCGCGGCAAGTCATGGTATCACA 647 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 | ||| || || ||||||| ||||||||||| |||||||||||||| ||| Sbjct 646 GAGCAGAGCCAAATGGCGGTAGTTGACATAGGAACCGTCAAAGGAGATGACG 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7149055145470518