Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq52848 114 2e-20 seq12009 100 4e-16 >seq52848 Length=1214 Score = 114 bits (126), Expect = 2e-20 Identities = 108/137 (79%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | || |||||| | ||||| || |||||||| || | ||| | Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167 Query 39699 TGAGCCAAAATATGGCAGCAAA-AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 | |||||| | ||||||||||| || ||||| ||||||||||| || || |||||||| Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107 Query 39758 GCAACAAGTCTCTCTCC 39774 || || | || |||||| Sbjct 106 GCCACGATTCGCTCTCC 90 >seq12009 Length=4249 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 69321 TATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTT 69380 ||| ||||| || || ||||| || ||||||| || |||||||| ||||| || ||||| Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027 Query 69381 TTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 |||| |||||||||||||| || || | || || |||||||| |||| || ||||| Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967 Query 69441 AAT 69443 || Sbjct 2966 GAT 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684348871215960