Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq52848 114 2e-20
seq12009 100 4e-16
>seq52848
Length=1214
Score = 114 bits (126), Expect = 2e-20
Identities = 108/137 (79%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||| || ||||| | || |||||| | ||||| || |||||||| || | ||| |
Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167
Query 39699 TGAGCCAAAATATGGCAGCAAA-AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757
| |||||| | ||||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107
Query 39758 GCAACAAGTCTCTCTCC 39774
|| || | || ||||||
Sbjct 106 GCCACGATTCGCTCTCC 90
>seq12009
Length=4249
Score = 100 bits (110), Expect = 4e-16
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 69321 TATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTT 69380
||| ||||| || || ||||| || ||||||| || |||||||| ||||| || |||||
Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027
Query 69381 TTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440
|||| |||||||||||||| || || | || || |||||||| |||| || |||||
Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967
Query 69441 AAT 69443
||
Sbjct 2966 GAT 2964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 684348871215960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |