Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq100944 95.1 1e-14 >seq100944 Length=4962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 87329 CTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAA 87388 ||||||||| ||| || || ||| |||| || || || || ||| |||||| ||||||| Sbjct 3241 CTGCTCCCATTTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAGGCTGTCAGTCCAGCAA 3300 Query 87389 ACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGT 87443 |||||||||| || | || | | ||| || | |||||||||||||||||||| Sbjct 3301 ACACAGCACAGGTCAGGAACAAGGCTTGCAGCACAGTGGAGTATTCATAGAAGGT 3355 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 87073 TTTTATTGGTTCTTTATAGATTTTAGTATATGCAATATGCGCATAAAGAGATCGATAATA 87132 ||| | || ||||| || || | || | | ||| ||| ||| || |||| || ||| Sbjct 1298 TTTCAGTGTTTCTTCATTGAGTCGAGGAGACGCAGGATGTGCAGGAACAGATTGACGATA 1357 Query 87133 TCCATGTAAATGTGGATAAATGCTACAATGTATTCGTCAGGAGAAAACTGTTTCATTAGC 87192 |||| || | || ||| | || | |||| || ||||| || | ||| ||||| ||| Sbjct 1358 TCCAGATAGAGGTTGATGGAAGCCAGGATGTGCTCCTCAGGGGAGAGCTGCTTCATCAGC 1417 Query 87193 TTATGGGTGTCATAAATTATAAAGCCACAGAAAACAACAGCCCCAAACCCAGAAATAACT 87252 ||||||||| || || |||||||||||||| | ||| ||| |||| | |||| Sbjct 1418 AGGCTGGTGTCATAGATGATGAAGCCACAGAAAACTAGAGCTCCAGCTCCAGCCAGAACT 1477 Query 87253 AAATCTGCGCTATCACTGTT 87272 | |||| ||| ||||| || Sbjct 1478 AGCTCTGTGCTGTCACTTTT 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396011816174695