Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq285305 141 1e-28 seq12009 87.8 2e-12 >seq285305 Length=1559 Score = 141 bits (156), Expect = 1e-28 Identities = 484/739 (65%), Gaps = 29/739 (4%) Strand=Plus/Minus Query 110867 TCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACCCTCAAAGGTTTCAT 110924 ||||||||||| |||| || | |||||| ||| ||||| ||| | || || | Sbjct 1537 TCCCACATGTCGTACTGGAGGATGCCCTTGCTGACA--GGAGAGCCCGGGTACGTCTCGT 1480 Query 110925 AGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTT 110984 ||| || || | | |||| || ||||||||||||||||| |||| || || || | Sbjct 1479 AGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCT 1420 Query 110985 CAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAA 111044 |||| || | || | | || || || ||||| | ||| || || | Sbjct 1419 CAAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGA 1360 Query 111045 TAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT 111104 | || | ||||| | ||||| ||||| | || || || ||||| ||| | || |||| Sbjct 1359 TGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACT 1300 Query 111105 TTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGG 111161 | | ||| || || || || || || |||| |||| ||| || ||| | Sbjct 1299 T---CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTC- 1244 Query 111162 TAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT 111218 ||||| ||||| | | || ||||||| | | |||||||| || ||| Sbjct 1243 --ACAATTACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGG 1189 Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278 |||| ||| | || ||||| || |||| ||| || || ||| |||||||| | Sbjct 1188 TGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGG 1129 Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 |||| || | || ||||| || | || | || || || || | ||||| |||| Sbjct 1128 TGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGT 1069 Query 111339 TACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398 | |||||| ||||||| || || |||||||||||||| || || || || || ||||| | Sbjct 1068 TGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGG 1009 Query 111399 ATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCC 111457 | | | ||| || | ||| || | | | | || || | | ||| || |||||| Sbjct 1008 ACTCAATAATGGCATACCACACCTGCTGAGCCT-TCACCACGCGCTTGACCTTGCCCTCC 950 Query 111458 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGG 111516 ||| || || |||||||| || ||||||||||| ||| | || ||| || || || Sbjct 949 CTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCCGGG 891 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || | ||||| | |||||||| ||| | |||| || | ||||||||| Sbjct 890 ACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAA 834 Query 111574 AAGGTCTGGAATCCACAGG 111592 ||||| || ||||||||| Sbjct 833 GAGGTCGGGGATCCACAGG 815 >seq12009 Length=4249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| || ||| |||||||||| || || || || | ||| || || || || Sbjct 3107 CTCGTCTTTACTGGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCC 3048 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || ||||||||||||||||| || || || Sbjct 3047 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCC 2988 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 || || |||||||| | || || || | ||| Sbjct 2987 AGTTTCTGTCTGTGACTCGATGATGGCGTGCCA 2955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625691489594400