Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 141 1e-28
seq12009 87.8 2e-12
>seq285305
Length=1559
Score = 141 bits (156), Expect = 1e-28
Identities = 484/739 (65%), Gaps = 29/739 (4%)
Strand=Plus/Minus
Query 110867 TCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACCCTCAAAGGTTTCAT 110924
||||||||||| |||| || | |||||| ||| ||||| ||| | || || |
Sbjct 1537 TCCCACATGTCGTACTGGAGGATGCCCTTGCTGACA--GGAGAGCCCGGGTACGTCTCGT 1480
Query 110925 AGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTT 110984
||| || || | | |||| || ||||||||||||||||| |||| || || || |
Sbjct 1479 AGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCT 1420
Query 110985 CAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAA 111044
|||| || | || | | || || || ||||| | ||| || || |
Sbjct 1419 CAAAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGA 1360
Query 111045 TAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT 111104
| || | ||||| | ||||| ||||| | || || || ||||| ||| | || ||||
Sbjct 1359 TGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACT 1300
Query 111105 TTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGG 111161
| | ||| || || || || || || |||| |||| ||| || ||| |
Sbjct 1299 T---CTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTC- 1244
Query 111162 TAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT 111218
||||| ||||| | | || ||||||| | | |||||||| || |||
Sbjct 1243 --ACAATTACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGG 1189
Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278
|||| ||| | || ||||| || |||| ||| || || ||| |||||||| |
Sbjct 1188 TGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGG 1129
Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338
|||| || | || ||||| || | || | || || || || | ||||| ||||
Sbjct 1128 TGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGT 1069
Query 111339 TACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398
| |||||| ||||||| || || |||||||||||||| || || || || || ||||| |
Sbjct 1068 TGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGG 1009
Query 111399 ATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCC 111457
| | | ||| || | ||| || | | | | || || | | ||| || ||||||
Sbjct 1008 ACTCAATAATGGCATACCACACCTGCTGAGCCT-TCACCACGCGCTTGACCTTGCCCTCC 950
Query 111458 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGG 111516
||| || || |||||||| || ||||||||||| ||| | || ||| || || ||
Sbjct 949 CTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCCGGG 891
Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCTTCCTCAACCCGCTTCATGAA 111573
|| | ||||| | |||||||| ||| | |||| || | |||||||||
Sbjct 890 ACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAA 834
Query 111574 AAGGTCTGGAATCCACAGG 111592
||||| || |||||||||
Sbjct 833 GAGGTCGGGGATCCACAGG 815
>seq12009
Length=4249
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324
||| || ||| |||||||||| || || || || | ||| || || || ||
Sbjct 3107 CTCGTCTTTACTGGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCC 3048
Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384
|| ||||| ||||| |||||| ||||||| || ||||||||||||||||| || || ||
Sbjct 3047 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCC 2988
Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417
|| || |||||||| | || || || | |||
Sbjct 2987 AGTTTCTGTCTGTGACTCGATGATGGCGTGCCA 2955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 625691489594400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |