Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 134 2e-26
seq178749 95.1 1e-14
seq52848 87.8 2e-12
>seq285305
Length=1559
Score = 134 bits (148), Expect = 2e-26
Identities = 301/444 (68%), Gaps = 15/444 (3%)
Strand=Plus/Plus
Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758
|| || |||| || || ||||| || || ||||||||||||||||| ||| || |
Sbjct 801 GACCTTTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGAGAGT---GGAAAGCAAC 857
Query 104759 AAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814
| |||||||| | ||||| | || || || || ||| ||| | ||| ||
Sbjct 858 CAAGACTGGTCTCTGATGTGTCCGAGCGAGTGTCCCGGGCTGGACGAGTGCTGGGGG-GA 916
Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTG 104872
||||||||| || || ||||| || || ||| | | ||| | || | | ||| ||||
Sbjct 917 GGAGTTTGAGGCTCTCTACACCAAATATGAG-AGGGAGGGCAAGGTCAAGCGCGT-GGTG 974
Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932
||| | |||||| | || ||| | |||| || || || || |||||||| |||
Sbjct 975 AAGGCTCAGCAGGTGTGGTATGCCATTATTGAGTCCCAGACAGAAACCGGTACACCGTAC 1034
Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992
||||| |||||||||||||| ||| ||||| || || ||||| | || |||||
Sbjct 1035 ATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTCGGCACCATCAAA 1094
Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052
| |||||||| ||||| || | |||| || | | |||||| ||| || |||
Sbjct 1095 TGCAGTAATCTCTGCACAGAGATAGTTGAATACACCAGCCAGGATGAGGTGGCGGTCTGT 1154
Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112
|| || || || ||||||||| || ||| || || ||| ||| ||||| | |
Sbjct 1155 AATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTTTGACTTT 1211
Query 105113 GAAAAACTCCACGAAGTTACGAAA 105136
||||||| | |||| || |||
Sbjct 1212 AAAAAACTGGCCCAAGTGACCAAA 1235
>seq178749
Length=757
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886
||| ||||| ||||||||||||||||||||| ||| || | ||||| |||||| ||||
Sbjct 417 TGTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 358
Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936
|| ||||| || || ||||||||||||||| ||| | |||||||
Sbjct 357 CCTGATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 308
>seq52848
Length=1214
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/120 (77%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 94862
|||||| || | || ||||| || ||||| |||||||||||||| || | ||| ||
Sbjct 93 GAGCGAATCGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCTGGCTCNGTTTGCTGC 152
Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922
||||||||||| |||||| |||| || ||||| |||||| || || || ||||| ||
Sbjct 153 CATTTATTGGCTAAAGAAGAGAGGCCTAATGCCGGGTCTCACCTATTCTAATGAGCTGAT 212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581087140104360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |