Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq285305 134 2e-26 seq178749 95.1 1e-14 seq52848 87.8 2e-12 >seq285305 Length=1559 Score = 134 bits (148), Expect = 2e-26 Identities = 301/444 (68%), Gaps = 15/444 (3%) Strand=Plus/Plus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 || || |||| || || ||||| || || ||||||||||||||||| ||| || | Sbjct 801 GACCTTTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGAGAGT---GGAAAGCAAC 857 Query 104759 AAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814 | |||||||| | ||||| | || || || || ||| ||| | ||| || Sbjct 858 CAAGACTGGTCTCTGATGTGTCCGAGCGAGTGTCCCGGGCTGGACGAGTGCTGGGGG-GA 916 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTG 104872 ||||||||| || || ||||| || || ||| | | ||| | || | | ||| |||| Sbjct 917 GGAGTTTGAGGCTCTCTACACCAAATATGAG-AGGGAGGGCAAGGTCAAGCGCGT-GGTG 974 Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 ||| | |||||| | || ||| | |||| || || || || |||||||| ||| Sbjct 975 AAGGCTCAGCAGGTGTGGTATGCCATTATTGAGTCCCAGACAGAAACCGGTACACCGTAC 1034 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| |||||||||||||| ||| ||||| || || ||||| | || ||||| Sbjct 1035 ATGCTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTCGGCACCATCAAA 1094 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 | |||||||| ||||| || | |||| || | | |||||| ||| || ||| Sbjct 1095 TGCAGTAATCTCTGCACAGAGATAGTTGAATACACCAGCCAGGATGAGGTGGCGGTCTGT 1154 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 || || || || ||||||||| || ||| || || ||| ||| ||||| | | Sbjct 1155 AATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTTTGACTTT 1211 Query 105113 GAAAAACTCCACGAAGTTACGAAA 105136 ||||||| | |||| || ||| Sbjct 1212 AAAAAACTGGCCCAAGTGACCAAA 1235 >seq178749 Length=757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||||||||||||||| ||| || | ||||| |||||| |||| Sbjct 417 TGTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 358 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 357 CCTGATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 308 >seq52848 Length=1214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 94862 |||||| || | || ||||| || ||||| |||||||||||||| || | ||| || Sbjct 93 GAGCGAATCGTGGCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCTGGCTCNGTTTGCTGC 152 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 ||||||||||| |||||| |||| || ||||| |||||| || || || ||||| || Sbjct 153 CATTTATTGGCTAAAGAAGAGAGGCCTAATGCCGGGTCTCACCTATTCTAATGAGCTGAT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581087140104360