Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq269824 228 2e-54 seq140600 107 6e-18 seq165894 84.2 7e-11 >seq269824 Length=1075 Score = 228 bits (252), Expect = 2e-54 Identities = 471/692 (68%), Gaps = 9/692 (1%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || || ||| | || || || || |||||||||| |||| || ||| || Sbjct 1004 ATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 945 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| |||||||| ||||||||||| || || || || || ||||| || Sbjct 944 GAGATTATTGCCAATGATCAGGGTAACAGAACCACTCCCAGCTATGTGGCCTTTACTGAC 885 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 |||||| | | ||||| ||| |||| || || |||| ||| ||||||| || || Sbjct 884 ACTGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTGGCTATGAATCCAACCAACACA 825 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 | |||||||| || || || ||||| |||| ||| || | || ||||| Sbjct 824 ATCTTTGATGCCAAACGGCTCATTGGAAGAAAGTTTAACGATCCGGTTGTTCATTCTGAC 765 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || | || ||||| | || | || | ||| || ||||||| | |||| Sbjct 764 ATGAAGCTTTGGCCTTTCAAGGT-GATC--AGTGACAATGGAAAACCAAAAGTCCAGGTA 708 Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTTAG 349559 || |||||||| || || || | ||| || || || ||||| || || ||||| | | Sbjct 707 GAGTATAAAGGCGAGACTAAGGC--TTTCTATCCAGAGGAAATCTCTTCCATGGTCCTGG 650 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 ||||||||||||| ||||||||||| || | || | | || || |||| || || | Sbjct 649 TTAAAATGAAGGAGATTGCTGAAGCCTACCTGGGACAGAGGGTGTCTAATGCAGTCATCA 590 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || ||||| ||||| ||||| | ||| | || || || |||||||| || Sbjct 589 CAGTTCCAGCGTATTTCAATGACTCTCAGAGACAAGCCACCAAGGATGCTGGGGTGATCT 530 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | ||| | ||| |||| || || || || || ||||| || ||||| || || || || Sbjct 529 CTGGGCTGAATATTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATCGCTTACGGTT 470 Query 349740 TTGATAAA-ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 | |||||| | | || ||| ||| | ||||| |||||| | || || || || Sbjct 469 TAGATAAAGGTAAAAGA-GGAGAGCGCAATGTACTTATCTTTGATCTTGGCGGAGGCACC 411 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 ||||| || || | || || |||| || || || ||||| || ||| | || || || Sbjct 410 TTTGACGTGTCCATCCTGACCATTGAGGATGGTATCTTTGAGGTGAAATCCACCGCGGGA 351 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || ||||| |||||||| ||||| ||||| || Sbjct 350 GACACACACCTTGGTGGGGAAGACTTTGACAA 319 >seq140600 Length=1543 Score = 107 bits (118), Expect = 6e-18 Identities = 354/543 (65%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 349766 aaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||| | ||||| ||||| | || || |||||||||||||| ||| | || || |||| Sbjct 1403 AATGTCCTTATCTTTGACCTTGGAGGGGGTACTTTTGATGTGTCAATTCTGACCATTGAG 1344 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 || || || ||||| || || | || || ||||| || || | ||||| || || ||| Sbjct 1343 GACGGCATCTTTGAGGTCAAGTCCACAGCCGGTGACACTCACTTGGGTGGTGAGGACTTT 1284 Query 349886 GATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCT-AAAATTGATAT 349944 || || || | ||| || || ||| || || ||||| |||| | |||| || || Sbjct 1283 GACAACCGAATGGTTAACCACTTCATTACTGAGTTCAAGCG-CAAGTTCAAAAAAGAAAT 1225 Query 349945 TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC 350004 | ||| |||| ||||||| || | || || ||||| ||||| || || | Sbjct 1224 CAACAACAATAAGCGAGCTGTGCGTCGTCTGCGCACAGCCTGTGAGCGTGCCAAACGCAC 1165 Query 350005 CTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTT 350064 | | || | || || || ||||| || ||||| || ||| || | || || Sbjct 1164 CCTCTCCAGCAGCACTCAGGCCAGCATTGAGATCGATTCACTCTATGAAGGAACGGACTT 1105 Query 350065 CTTTTCATCTATTACACGTGCTCGGTTTGA--AGAATTATGTATGGATCTTTTTAGAGCA 350122 || | || || || | || || ||||| || | ||| | || || || | | | Sbjct 1104 CTACACTTCAATCACTAGAGCCCGTTTTGAGGAGCTTAATGCA--GACCTCTTCCGTGGA 1047 Query 350123 ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGAT 350182 || | || |||||||| || | | | ||||| || ||| ||| ||||| || Sbjct 1046 ACCCTCGAGCCTGTGGAGAAGGCCCTGAGGGATGCCAAGATGGACAAGGCCCAGATACAT 987 Query 350183 GAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAG 350242 || | || | || ||||| || |||||||| || || ||||| || | || || Sbjct 986 GACATTGTCCTGGTGGGTGGCTCCACACGTATCCCCAAGATTCAAAAGCTGCTGCAGGAC 927 Query 350243 TTTTTTAATGGCAAAGAACCTTCT-AGATCAATTAATCCAGATGAAGCTGTTGCATATGG 350301 || || ||||| || | | | ||| | || || |||||||| ||||| || || || Sbjct 926 TTCTTCAATGGTCGGGACCTTAATAAGAGC-ATCAACCCAGATGAGGCTGTGGCCTACGG 868 Query 350302 TGC 350304 ||| Sbjct 867 TGC 865 >seq165894 Length=660 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || || || || | ||| || ||||| || || ||||| |||||||||| Sbjct 522 CTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCCTCCAGCTGTTTGCCAGCAAAGA 581 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | ||||| ||||||||||| ||||||||| Sbjct 582 TCAGACGCTGCTGATCAGGTGGAATTCCT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509466270720617