Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 241 1e-58
seq178749 89.7 6e-13
seq52848 87.8 2e-12
seq12009 87.8 2e-12
seq176571 84.2 2e-11
>seq285305
Length=1559
Score = 241 bits (266), Expect = 1e-58
Identities = 735/1116 (66%), Gaps = 55/1116 (5%)
Strand=Plus/Minus
Query 78686 TCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGT 78745
|| |||||||||| || ||||| |||| | | || || ||| | |||||||||
Sbjct 1539 TCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGT 1480
Query 78746 AAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCT 78805
| | || | ||| ||| || ||||| | | ||||| |||| ||| | | ||
Sbjct 1479 AGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCT 1420
Query 78806 CGAAGATGCCCTTGTTGAGCTCGC-GCGCCT-TGGTCTCGTCGAACGA--AAGGCCGAGC 78861
| || || |||||||| ||| | |||| ||| || || |||| || || | |
Sbjct 1419 CAAAAATCTGGATGTTGAGC-CGCTGAGCCTCTGGGCTT-TCAAACGGGTAACGC--ATC 1364
Query 78862 ATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG 78921
| |||||| | || |||| || ||||| ||||| ||||||| | ||| ||| |||||
Sbjct 1363 AGGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTG 1304
Query 78922 CTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTA 78978
||| | || |||| | ||||| ||||| ||||||| |||||||||
Sbjct 1303 GACTTCT---CAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTT 1247
Query 78979 CGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATG 79038
| | | || ||||| | | || ||| || |||||| ||| | | |
Sbjct 1246 CTCACAATTACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAG----TCCGCTCAGG 1191
Query 79039 AAAGTCG-----GTAGGCACAGCGATG----CCAGGTTGCACACGGCCGTCTCGTCCGGG 79089
| || || | | ||||||| |||| || || || ||| ||| ||| ||
Sbjct 1190 GGTGACGTACATGTTG--AGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGG 1133
Query 79090 CTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTC 79149
|| | || | || |||||||| | |||| | ||||||||||||| |||| |
Sbjct 1132 CTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGC 1073
Query 79150 TGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACC 79209
|||||||||||| ||| |||||||| |||||| ||||||||| || ||||| || |
Sbjct 1072 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTC 1013
Query 79210 TGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTG----TACCG 79265
|| || | || | | | ||| | | | | ||| || || |||| | ||
Sbjct 1012 TGGGACTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACGCGCTTGACCTTGCCC 953
Query 79266 ACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAG 79325
|||| | | || | ||| | | | || ||||||| || ||| |||
Sbjct 952 TCCCTCT----CATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAG 897
Query 79326 GCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCAT 79385
|| || |||||| ||| |||||||| |||||| | || | || || ||| |||
Sbjct 896 CCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCAT 837
Query 79386 GAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444
||||||||| |||||||||||| |||| ||| ||||| | | | |||||| | ||
Sbjct 836 GAAGAGGTCGGGGATCCACAGG-CCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGC 778
Query 79445 CCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGA 79504
|| |||| |||||| | || || | | || |||||||||||||| || |
Sbjct 777 CCGTGTTCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACA 718
Query 79505 TGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGA 79564
||||||| | || | |||| ||| ||||||| |||||| || ||||||||||||
Sbjct 717 TGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGT 658
Query 79565 AAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTAC 79624
|||| | |||||||| |||| |||| | | |||||| || || || ||||
Sbjct 657 AAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGCCAGCGA----TGTA- 603
Query 79625 CGCTCGCCCGAATGTTC-GA-GCAG-TG-----GATTCCGATGCCCCCGGACCACTTGGA 79676
||| |||| || || || |||| || | ||||| || || | | |||||
Sbjct 602 -GCT--CCCGGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCCGCTGATTTGGA 546
Query 79677 GATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGC 79736
|||| | ||||||| ||| ||||| || || ||||| || || |||||||||||| ||
Sbjct 545 GATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCGTCCTTCATGGC 486
Query 79737 GACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGT 79772
|| |||||||||||| |||| ||| || |||| ||
Sbjct 485 GAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGT 450
Score = 190 bits (210), Expect = 2e-43
Identities = 714/1104 (65%), Gaps = 37/1104 (3%)
Strand=Plus/Plus
Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291
|| |||| || ||| |||| ||||| ||||| | || |||||||| |||||||||||
Sbjct 450 ACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATTGAA 509
Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351
||||| || || ||||| ||| ||||||| | ||||||||| | | || || |||||
Sbjct 510 GGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGGAATCGGT 569
Query 19352 ATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAG 19409
| ||| || | ||| | || | || | ||| ||| || |||||
Sbjct 570 GTGG-CTG-TCAGCTGCATCAGATCAACCGGGAGCTACATCGCTGGCACCAACGGCAACT 627
Query 19410 CCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGG 19469
| |||| ||||||| ||||| | || | |||||||||||| | |||||| ||||||
Sbjct 628 CTAACGGGCTCGTCCCCATGCTGAGGGTTTACAACAACACGGCACGATACGTCGACCAGG 687
Query 19470 GGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCA 19529
| ||| ||| | || | |||||||| ||||| ||||| ||||| || ||
Sbjct 688 GAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCATTTTGATGTGT 747
Query 19530 TGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAG--ATGCGCTGTCGCGACCT 19587
| |||||| | || ||| |||| ||| | |||||| | | || | |||||
Sbjct 748 TCGATTTCTTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAAAGAGC--CAGAGACCT 805
Query 19588 CTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAAT 19646
||| |||||| ||||||| || ||||| |||||| ||| || || | || |||| |
Sbjct 806 TTTCTACGGCC-TGTGGATCCCCGACCTCTTCATGAAGAGAGTGGAAAGCAACCAAGACT 864
Query 19647 GGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCA 19706
|| |||||||| ||| ||| || || || || ||| || || |||| |||
Sbjct 865 GGTCTCTGATGTGTCCGAGCGAGTGTCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTG 924
Query 19707 ATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGG 19766
| | | ||| | || | ||||| | ||||| ||||| ||| | |
Sbjct 925 AGGCTCTCTACACCAAATATGAGAGGGAGGGCAAGGTCAAGCGCGTGGTGAAGGCTCAGC 984
Query 19767 ACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACA 19826
| || ||| | | | | | |||| || ||||| |||||||||||| |||||
Sbjct 985 AGGTGTGGTATGCCATTATTGAGTCCCAGACAGAAACCGGTACACCGTACATGCTCTACA 1044
Query 19827 AGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACC 19886
| |||||| ||| ||| || ||| |||| ||||| | ||||| | || |
Sbjct 1045 AAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTCGGCACCATCAAATGCAGTAATC 1104
Query 19887 TGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGT 19946
| || || || || | || ||| | ||| ||| || || |||||||||||||
Sbjct 1105 TCTGCACAGAGATAGTTGAATACACCAGCCAGGATGAGGTGGCGGTCTGTAATCTGGCGT 1164
Query 19947 CCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTTGCCAAATTG 19999
|| | || | | ||||| | ||| | || |||||| ||| ||
Sbjct 1165 CCATCGCTCTCAACATGTACGTCA----CCCCTGAGCGGACTTTTGACTTTAAAAAACTG 1220
Query 20000 TACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTAC 20059
| | |||||| || | | | || ||||| ||||||| ||||| |||
Sbjct 1221 GCCCAAGTGACCAAAGTAATTGTGAGAAACCTGAACAAGATCATCGACATCAACTTCTAC 1280
Query 20060 CC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTC 20116
|| | |||| || | | ||||| || | ||| ||| ||||||||| |||||| |||
Sbjct 1281 CCAGTGCCCGAAGCTGAG---AAGTCCAACAAGCGTCACAGGCCGATCGGGATCGGTGTC 1337
Query 20117 CAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA-AGGCGC- 20174
|| || |||| |||| ||||| || | | | | || || | |||| |||| |
Sbjct 1338 CAAGGATTGGCGGACGCCTTCATCCTGATGCGTTACCCGTTTGA-AAGCCCAGAGGCTCA 1396
Query 20175 GCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG---T 20231
||| |||||||| || || ||| | | ||| |||| | |||||| || |
Sbjct 1397 GCG-GCTCAACATCCAGATTTTTGAGACAATCTACTACGCTTC---CCTGGAGGCGAGCT 1452
Query 20232 GCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGG 20291
|||| || ||| ||| ||||| | |||||||||| | ||| || || | | |||
Sbjct 1453 GCGATCTGGCCGCCGAGCACGGCACCTACGAGACGTACCCGGGCTCTCCTGTCAGCAAGG 1512
Query 20292 GTATCCTCCAGCCGGACATGTGGG 20315
| ||||||||| ||||||||||
Sbjct 1513 GCATCCTCCAGTACGACATGTGGG 1536
>seq178749
Length=757
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062
||||| || |||||||||||||| || ||| || || |||||||| || ||| | |||
Sbjct 416 GTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGC 357
Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111
|| ||||| || |||| |||||||||||||| || | | |||||||
Sbjct 356 CTGATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 308
>seq52848
Length=1214
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/122 (76%), Gaps = 1/122 (1%)
Strand=Plus/Plus
Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG-TGCTATTTTCTGGCT 60049
||||||||| ||||| || ||||||||||||||||| | || ||| |||| |||||
Sbjct 105 GCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCTGGCTCNGTTTGCTGCCATTTATTGGCT 164
Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109
|| ||| | ||||| |||||||| || | | || || ||||||||| | |||| ||
Sbjct 165 AAAGAAGAGAGGCCTAATGCCGGGTCTCACCTATTCTAATGAGCTGATTAGCAGGGATGA 224
Query 60110 GG 60111
||
Sbjct 225 GG 226
>seq12009
Length=4249
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157
||| ||||| || ||||||| ||| || |||||||| || | |||| |||||||||
Sbjct 3089 CTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCT 3030
Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205
|||| ||| ||||||||||||||| |||||| || || || || ||
Sbjct 3029 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTC 2982
>seq176571
Length=1504
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389
|| ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || ||||||
Sbjct 1241 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 1182
Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
||||||||||||||||| || || || ||
Sbjct 1181 AACTTCTTTGAGAAGCGTGTGGGCGAGTA 1153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546480592058160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |