Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq285305 241 1e-58 seq178749 89.7 6e-13 seq52848 87.8 2e-12 seq12009 87.8 2e-12 seq176571 84.2 2e-11 >seq285305 Length=1559 Score = 241 bits (266), Expect = 1e-58 Identities = 735/1116 (66%), Gaps = 55/1116 (5%) Strand=Plus/Minus Query 78686 TCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGT 78745 || |||||||||| || ||||| |||| | | || || ||| | ||||||||| Sbjct 1539 TCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGT 1480 Query 78746 AAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCT 78805 | | || | ||| ||| || ||||| | | ||||| |||| ||| | | || Sbjct 1479 AGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCT 1420 Query 78806 CGAAGATGCCCTTGTTGAGCTCGC-GCGCCT-TGGTCTCGTCGAACGA--AAGGCCGAGC 78861 | || || |||||||| ||| | |||| ||| || || |||| || || | | Sbjct 1419 CAAAAATCTGGATGTTGAGC-CGCTGAGCCTCTGGGCTT-TCAAACGGGTAACGC--ATC 1364 Query 78862 ATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG 78921 | |||||| | || |||| || ||||| ||||| ||||||| | ||| ||| ||||| Sbjct 1363 AGGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTG 1304 Query 78922 CTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTA 78978 ||| | || |||| | ||||| ||||| ||||||| ||||||||| Sbjct 1303 GACTTCT---CAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTT 1247 Query 78979 CGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATG 79038 | | | || ||||| | | || ||| || |||||| ||| | | | Sbjct 1246 CTCACAATTACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAG----TCCGCTCAGG 1191 Query 79039 AAAGTCG-----GTAGGCACAGCGATG----CCAGGTTGCACACGGCCGTCTCGTCCGGG 79089 | || || | | ||||||| |||| || || || ||| ||| ||| || Sbjct 1190 GGTGACGTACATGTTG--AGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGG 1133 Query 79090 CTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTC 79149 || | || | || |||||||| | |||| | ||||||||||||| |||| | Sbjct 1132 CTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGC 1073 Query 79150 TGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACC 79209 |||||||||||| ||| |||||||| |||||| ||||||||| || ||||| || | Sbjct 1072 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTC 1013 Query 79210 TGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTG----TACCG 79265 || || | || | | | ||| | | | | ||| || || |||| | || Sbjct 1012 TGGGACTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACGCGCTTGACCTTGCCC 953 Query 79266 ACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAG 79325 |||| | | || | ||| | | | || ||||||| || ||| ||| Sbjct 952 TCCCTCT----CATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAG 897 Query 79326 GCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCAT 79385 || || |||||| ||| |||||||| |||||| | || | || || ||| ||| Sbjct 896 CCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCAT 837 Query 79386 GAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444 ||||||||| |||||||||||| |||| ||| ||||| | | | |||||| | || Sbjct 836 GAAGAGGTCGGGGATCCACAGG-CCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGC 778 Query 79445 CCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGA 79504 || |||| |||||| | || || | | || |||||||||||||| || | Sbjct 777 CCGTGTTCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACA 718 Query 79505 TGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGA 79564 ||||||| | || | |||| ||| ||||||| |||||| || |||||||||||| Sbjct 717 TGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGT 658 Query 79565 AAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTAC 79624 |||| | |||||||| |||| |||| | | |||||| || || || |||| Sbjct 657 AAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGCCAGCGA----TGTA- 603 Query 79625 CGCTCGCCCGAATGTTC-GA-GCAG-TG-----GATTCCGATGCCCCCGGACCACTTGGA 79676 ||| |||| || || || |||| || | ||||| || || | | ||||| Sbjct 602 -GCT--CCCGGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCCGCTGATTTGGA 546 Query 79677 GATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGC 79736 |||| | ||||||| ||| ||||| || || ||||| || || |||||||||||| || Sbjct 545 GATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCGTCCTTCATGGC 486 Query 79737 GACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGT 79772 || |||||||||||| |||| ||| || |||| || Sbjct 485 GAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGT 450 Score = 190 bits (210), Expect = 2e-43 Identities = 714/1104 (65%), Gaps = 37/1104 (3%) Strand=Plus/Plus Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || |||| || ||| |||| ||||| ||||| | || |||||||| ||||||||||| Sbjct 450 ACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATTGAA 509 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 ||||| || || ||||| ||| ||||||| | ||||||||| | | || || ||||| Sbjct 510 GGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGGAATCGGT 569 Query 19352 ATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAG 19409 | ||| || | ||| | || | || | ||| ||| || ||||| Sbjct 570 GTGG-CTG-TCAGCTGCATCAGATCAACCGGGAGCTACATCGCTGGCACCAACGGCAACT 627 Query 19410 CCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGG 19469 | |||| ||||||| ||||| | || | |||||||||||| | |||||| |||||| Sbjct 628 CTAACGGGCTCGTCCCCATGCTGAGGGTTTACAACAACACGGCACGATACGTCGACCAGG 687 Query 19470 GGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCA 19529 | ||| ||| | || | |||||||| ||||| ||||| ||||| || || Sbjct 688 GAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCATTTTGATGTGT 747 Query 19530 TGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAG--ATGCGCTGTCGCGACCT 19587 | |||||| | || ||| |||| ||| | |||||| | | || | ||||| Sbjct 748 TCGATTTCTTGGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAAAGAGC--CAGAGACCT 805 Query 19588 CTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAAT 19646 ||| |||||| ||||||| || ||||| |||||| ||| || || | || |||| | Sbjct 806 TTTCTACGGCC-TGTGGATCCCCGACCTCTTCATGAAGAGAGTGGAAAGCAACCAAGACT 864 Query 19647 GGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCA 19706 || |||||||| ||| ||| || || || || ||| || || |||| ||| Sbjct 865 GGTCTCTGATGTGTCCGAGCGAGTGTCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTG 924 Query 19707 ATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGG 19766 | | | ||| | || | ||||| | ||||| ||||| ||| | | Sbjct 925 AGGCTCTCTACACCAAATATGAGAGGGAGGGCAAGGTCAAGCGCGTGGTGAAGGCTCAGC 984 Query 19767 ACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACA 19826 | || ||| | | | | | |||| || ||||| |||||||||||| ||||| Sbjct 985 AGGTGTGGTATGCCATTATTGAGTCCCAGACAGAAACCGGTACACCGTACATGCTCTACA 1044 Query 19827 AGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACC 19886 | |||||| ||| ||| || ||| |||| ||||| | ||||| | || | Sbjct 1045 AAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTCGGCACCATCAAATGCAGTAATC 1104 Query 19887 TGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGT 19946 | || || || || | || ||| | ||| ||| || || ||||||||||||| Sbjct 1105 TCTGCACAGAGATAGTTGAATACACCAGCCAGGATGAGGTGGCGGTCTGTAATCTGGCGT 1164 Query 19947 CCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTTGCCAAATTG 19999 || | || | | ||||| | ||| | || |||||| ||| || Sbjct 1165 CCATCGCTCTCAACATGTACGTCA----CCCCTGAGCGGACTTTTGACTTTAAAAAACTG 1220 Query 20000 TACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTAC 20059 | | |||||| || | | | || ||||| ||||||| ||||| ||| Sbjct 1221 GCCCAAGTGACCAAAGTAATTGTGAGAAACCTGAACAAGATCATCGACATCAACTTCTAC 1280 Query 20060 CC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTC 20116 || | |||| || | | ||||| || | ||| ||| ||||||||| |||||| ||| Sbjct 1281 CCAGTGCCCGAAGCTGAG---AAGTCCAACAAGCGTCACAGGCCGATCGGGATCGGTGTC 1337 Query 20117 CAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA-AGGCGC- 20174 || || |||| |||| ||||| || | | | | || || | |||| |||| | Sbjct 1338 CAAGGATTGGCGGACGCCTTCATCCTGATGCGTTACCCGTTTGA-AAGCCCAGAGGCTCA 1396 Query 20175 GCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG---T 20231 ||| |||||||| || || ||| | | ||| |||| | |||||| || | Sbjct 1397 GCG-GCTCAACATCCAGATTTTTGAGACAATCTACTACGCTTC---CCTGGAGGCGAGCT 1452 Query 20232 GCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGG 20291 |||| || ||| ||| ||||| | |||||||||| | ||| || || | | ||| Sbjct 1453 GCGATCTGGCCGCCGAGCACGGCACCTACGAGACGTACCCGGGCTCTCCTGTCAGCAAGG 1512 Query 20292 GTATCCTCCAGCCGGACATGTGGG 20315 | ||||||||| |||||||||| Sbjct 1513 GCATCCTCCAGTACGACATGTGGG 1536 >seq178749 Length=757 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || |||||||||||||| || ||| || || |||||||| || ||| | ||| Sbjct 416 GTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGC 357 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || |||| |||||||||||||| || | | ||||||| Sbjct 356 CTGATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 308 >seq52848 Length=1214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG-TGCTATTTTCTGGCT 60049 ||||||||| ||||| || ||||||||||||||||| | || ||| |||| ||||| Sbjct 105 GCTTTTGCAGCGGTGGAGGGCATCTTCTTCTCTGGCTCNGTTTGCTGCCATTTATTGGCT 164 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | ||||| |||||||| || | | || || ||||||||| | |||| || Sbjct 165 AAAGAAGAGAGGCCTAATGCCGGGTCTCACCTATTCTAATGAGCTGATTAGCAGGGATGA 224 Query 60110 GG 60111 || Sbjct 225 GG 226 >seq12009 Length=4249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| ||||| || ||||||| ||| || |||||||| || | |||| ||||||||| Sbjct 3089 CTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCT 3030 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||| || || || || || Sbjct 3029 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTC 2982 >seq176571 Length=1504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 1241 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 1182 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 1181 AACTTCTTTGAGAAGCGTGTGGGCGAGTA 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546480592058160