Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq285305 170 2e-37 seq185796 104 3e-17 >seq285305 Length=1559 Score = 170 bits (188), Expect = 2e-37 Identities = 429/642 (67%), Gaps = 10/642 (2%) Strand=Plus/Plus Query 53318 CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTAC 53377 |||||| |||| |||||||||||| | || |||||||| ||| || || ||||| || Sbjct 459 CCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATTGAAGGCATTTAT 518 Query 53378 GAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTG- 53436 || ||||| ||| |||| |||| ||||||||| | |||| || |||||| | ||| Sbjct 519 GACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGGAATCGGTGT-GGCTGT 577 Query 53437 CTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAAT 53496 | | || | | | ||| | ||| || || |||||| | | | || | Sbjct 578 CAGCTGCATCAGATCAACCGGGAGCTACATCGCTGGCACCAACGGCAACTCTAACGGGCT 637 Query 53497 CGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAA 53556 ||| || ||||| | || | |||||||||||| || |||||| ||||||| || || Sbjct 638 CGTCCCCATGCTGAGGGTTTACAACAACACGGCACGATACGTCGACCAGGGAGGCAACAA 697 Query 53557 GCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCT 53616 | | || | |||||||| ||||| ||||||||||| || | | || || | Sbjct 698 GAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCATTTTGATGTGTTCGATTTCTT 757 Query 53617 CGAGCTGCGTCTGAATCAGGGTGACGAAGAG--ATGCGCTGCCGTGACCTGTT-TACAGC 53673 |||||| ||| ||| | || ||| | | || | | ||||| || ||| || Sbjct 758 GGAGCTGAAGAAGAACACGGGCAAGGAGGAGCAAAGAGC--CAGAGACCTTTTCTACGGC 815 Query 53674 TCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGAT 53733 |||||||| || |||||||||||| | | ||||| | || | || |||| ||||| Sbjct 816 -CTGTGGATCCCCGACCTCTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGAT 874 Query 53734 GTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 ||| |||| |||||| ||||| || | | ||| || || ||||||||| | | | | Sbjct 875 GTGTCCGAGCGAGTGTCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGGCTCTCT 933 Query 53793 ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGG 53852 | | || | ||||| |||| ||| ||||| | |||| ||| Sbjct 934 ACACCAAATATGAGAGGGAGGGCAAGGTCAAGCGCGTGGTGAAGGCTCAGCAGGTGTGGT 993 Query 53853 ATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGG 53912 |||| || | || |||| || || || || ||||||||| |||||| || | Sbjct 994 ATGCCATTATTGAGTCCCAGACAGAAACCGGTACACCGTACATGCTCTACAAAGACGCCT 1053 Query 53913 TCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAAT 53954 |||| ||||||||||||| |||| ||||| |||||||| Sbjct 1054 GCAACAGGAAGAGCAACCAGCAGAATCTCGGCACCATCAAAT 1095 >seq185796 Length=1075 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || ||||||| ||| |||||||| ||||| ||| | ||| ||||| || || Sbjct 676 GTGAAGATATAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATACGAGTACCAAACTGA 617 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| ||||||||||| ||| Sbjct 616 CCCAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTTCACA 557 Query 117425 ATCGT 117429 || || Sbjct 556 ATGGT 552 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||| || || | |||||| ||||| ||||| || | || || |||||||| Sbjct 676 GTGAAGATATAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATACGAGTACCAAACTGA 617 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| |||| ||| | ||||||| |||||| || ||||||||||| |||||| Sbjct 616 CCCAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTTCACA 557 Query 152149 ATCGT 152153 || || Sbjct 556 ATGGT 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545176669612200