Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq285305 168 8e-37 seq185796 87.8 2e-12 seq12009 86.0 7e-12 >seq285305 Length=1559 Score = 168 bits (186), Expect = 8e-37 Identities = 707/1102 (64%), Gaps = 42/1102 (4%) Strand=Plus/Minus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| | |||||||| | || | ||||| |||| | |||||||||| Sbjct 1536 CCCACATGTCGTACTGGAGGATGCCCTTGCTGA--CAGGAGAGCCCGGGTACGTCTCGTA 1479 Query 80598 CGGGCCCTCCGTCTTGGCCAGCTCACA---CGACTCCATAAGGGCCGCGTGATAAATGCA 80654 | ||| | | |||||| || || || |||| |||| |||| || || Sbjct 1478 GGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCC---AGGGAAGCGTAGTAGATTGT 1422 Query 80655 CTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCA 80713 |||||| | |||| | |||| | |||| |||| || |||| | | ||||| Sbjct 1421 CTCAAAAATCTGGATGTTGA-GCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCA 1363 Query 80714 TCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG 80773 ||||| |||| |||| || || || ||||| ||||||| | ||| |||||||| | Sbjct 1362 GGATGAAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGG 1303 Query 80774 ATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG 80833 | ||| || || || | |||||| ||||| | ||||||| ||||||||| | Sbjct 1302 ACTTCTCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCA 1243 Query 80834 TAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATG 80893 || || || || | ||||| | |||||| || || || ||| || Sbjct 1242 CAATTACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAA--AGT--CCGCTCAGGGGTG 1187 Query 80894 CCGGA-AGGCTCAG------GGACGCCAGATTGCACACGGCCACCTCTTC--AGCATCTG 80944 || | | | | || |||||||||||| || || |||||||| || || || Sbjct 1186 ACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGCTGGTG 1127 Query 80945 TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGT 81004 | | || || || || ||||| | |||| | || || || || || || | ||||| Sbjct 1126 T--ATTCAACTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGT 1069 Query 81005 TTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTG 81064 | ||| |||||| ||||| |||||| ||||||||| |||||||| || ||| | Sbjct 1068 TGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGG 1009 Query 81065 ACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCCTT 81121 ||| | ||||| | ||| | || | ||||| ||||| ||| || ||||| | Sbjct 1008 ACTCAATAATGGCATACCACACCTGCTGAGCCTTCACCACGCGCTT---GACCTTGCCCT 952 Query 81122 CGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | | |||| |||| ||| | || |||| | || || || | | Sbjct 951 CCCTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGG 892 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 | |||||| | || |||||||| |||||| || | | || || ||||||||| Sbjct 891 GACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGA 832 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 ||| |||||||| ||| || ||| ||||| | | | |||||| | ||| || Sbjct 831 GGTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGT 772 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | || ||| | || || | | || |||||| |||||||| |||| ||||| Sbjct 771 TCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGA 712 Query 81362 ----TC--GACCCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 || | | |||| ||| ||||||| |||||| || || || ||| | | Sbjct 711 AGGCTCCGGGTCTCTTG---TTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAA 655 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475 | | || ||| |||| || || | || | ||||| || || |||| ||| Sbjct 654 CCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGG 595 Query 81476 TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 | | | | ||||| | | |||||| || || | | || || || | || | Sbjct 594 TTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGC 535 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 || | |||| || |||||||| || || ||||| || | |||||| | |||| ||| | Sbjct 534 ACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGC 475 Query 81596 AGCTTGACATCTGAGGGCtttt 81617 |||| |||| |||||| || || Sbjct 474 AGCTGGACAGCTGAGGCCTGTT 453 >seq185796 Length=1075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | |||||||||||||| || || ||| ||||| | || ||||| Sbjct 552 ACCATTGTGAACTTGGCTCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCCA 611 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 || |||||||| || || || || ||||| |||||||| ||| | ||||| ||| Sbjct 612 CTGGGTCAGTTTGGTACTCGTATCAATGGAGGCAAAGATGCTGCCAGCCCTCGTTATATC 671 Query 32245 TTCACC 32250 |||||| Sbjct 672 TTCACC 677 >seq12009 Length=4249 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| | ||| || ||||||| ||| || || || || ||||| || | |||||| Sbjct 3090 ACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGC 3031 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || || || || || |||||||| Sbjct 3030 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACT 2971 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | | | ||||| ||||| Sbjct 2970 CGATGATGGCGTGCCACAGTTGCTGAGCCTTCACCAC 2934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568185002845680