Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq178749 95.1 1e-14 seq52848 91.5 1e-13 >seq178749 Length=757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| || || ||||| || || || | ||||||||| | |||||||| || Sbjct 310 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCTTC 369 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || ||||| || || ||||| ||||| || || || || ||||| || || Sbjct 370 AGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGGCC 429 Query 4692 AC 4693 || Sbjct 430 AC 431 >seq52848 Length=1214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || ||||||||||| || |||||| | || | || ||||||| |||||||| || Sbjct 224 TCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCTTT 165 Query 4632 AGCCAAAATATAGCGGCAAA-TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 |||||| | || || ||||| || ||||| ||||| ||||| || || || ||||| || Sbjct 164 AGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAAGC 105 Query 4691 TACTAATCG 4699 || | ||| Sbjct 104 CACGATTCG 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425497885785287