Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq214408 143 2e-29 seq211158 134 1e-26 seq175470 116 3e-21 >seq214408 Length=843 Score = 143 bits (158), Expect = 2e-29 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 ||||||||||||| | || || || | ||| | || |||||||| | ||| Sbjct 502 GGTGAACGGATGGAGCAACTTCTACCTTCCCGAGACAGTACACATGCAGGTTGTAGGTGT 443 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| ||| ||| | | || ||||||||||||||| |||||||||| |||||| | || Sbjct 442 GGTGGAGGGCACTTCCTGCCCATGTGACCAGCTTGTTGTGATGACCTGTGAGGACAAAAA 383 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 | | |||| ||| || ||||| |||||||||||||||||| | | || ||| | Sbjct 382 GATTTACGCCTACGATGGAGAGGAGCTGCATGTGGTGGCTTCAAGCTTAGAGCAGCTATT 323 Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313 | |||||||| | ||||| |||| | ||||||||| | ||||||||||||||| | Sbjct 322 TAAGGAAGGAATTGAGTATCCAGCATCCAAGAGCTATTGCAAGGGGGAGGCCTTCAAAGA 263 Query 69314 TATG 69317 |||| Sbjct 262 TATG 259 >seq211158 Length=742 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| |||| ||| || |||||||| || || || | ||||||||||||||| || || Sbjct 557 AGCCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATGTTGAAAGGC 498 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || || | |||||| |||||||| || ||||| || || Sbjct 497 ACTCCCAGACCCATATCGCCTGAGCGCTGGTACAGCTGACATGACAGCTCGCCGTCATGC 438 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| |||||||| | |||||| || ||||| || |||||||| Sbjct 437 ACGTAGAACTGACAGAGGGCGTGACATGGAGGCAGCGCCATGAG 394 >seq175470 Length=1276 Score = 116 bits (128), Expect = 3e-21 Identities = 203/292 (70%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 69030 ATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGA 69089 |||||| | |||| ||||| || | ||||| || | |||||| | ||||||| Sbjct 797 ATAGGAGGCCTTGAAGACACCATTTACAGAGACAAAGATGACGAGGTGAATGCATGGGGA 738 Query 69090 AAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCA 69149 || || ||| | |||| | || |||||||| | ||| ||| ||| || Sbjct 737 AAATTCTATCTTCCCAAGACGGTACACATGCAGGTTTTAGGTGTGGTGGAGGGCACCTTG 678 Query 69150 TACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGAC 69209 | |||||||||||||| ||||||||||| |||||| | ||| | |||| ||||| Sbjct 677 TGTGCGTGTGACCAGCTTGTTCTGATGACCTGTGAGGACAAAAAGCTTTACGCTTATGAT 618 Query 69210 GGAGACGAGCTGCATGTGGTGGCTAACTGTCTGG-ATCAGATGGGGGAA---GAAGGAAT 69265 ||||| || ||||| |||||||| | |||| | | | | | ||| ||| ||| Sbjct 617 GGAGAGAAGATGCATTTGGTGGCT-TCAAGCTGGCAGCGGCTAGATGAAATTAAAGAAAT 559 Query 69266 AGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 || ||||| |||| | |||||||||| | |||||||||||| || ||||| Sbjct 558 AGAATATCCAGCATCCAAGAGCTATTACAAGGGGGAGGCCTTCCAAGATATG 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368164570069709