Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 313 3e-80
seq12009 96.9 5e-15
>seq285305
Length=1559
Score = 313 bits (346), Expect = 3e-80
Identities = 958/1473 (65%), Gaps = 36/1473 (2%)
Strand=Plus/Minus
Query 77391 GCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTG 77450
|| || || || ||||| |||| | |||| || ||||| || ||||||| | |||
Sbjct 1462 GCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTG 1403
Query 77451 AGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAAT 77510
|| || || || || |||||||| ||| | | || || ||||| || || |||
Sbjct 1402 AGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAAT 1343
Query 77511 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATA 77570
|| || || || || || || || || || | ||| ||||| | | |||||| || |
Sbjct 1342 CCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACT 1283
Query 77571 GGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCC 77630
|| || | || ||||| || || || || || ||||| |||| |||||| ||| |
Sbjct 1282 GGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGG 1223
Query 77631 TTTAGTTTAAGAAAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGAT 77687
||||| ||| ||||| | | || | || ||||||| | ||| || ||
Sbjct 1222 GCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGAC 1163
Query 77688 GCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGA 77747
|| |||||||| || || ||||||| | ||| |||| | |||||| || || |||
Sbjct 1162 GCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAGAGA 1103
Query 77748 TTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTA 77807
||||| |||||||| ||||| ||||| || ||||||||||| | ||||| | ||| ||
Sbjct 1102 TTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTG 1043
Query 77808 TAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 77867
|| || || |||| || |||||||| |||| || || ||||| | | ||| || ||
Sbjct 1042 TAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACAC--CT 985
Query 77868 -CT-AGCTTTTATCA-TAGATTTGTATCGCCTCTCTCTTTCATATT--GAGTATATAGCC 77922
|| ||| || | || | || | ||| ||| || ||||||| | ||| | ||||
Sbjct 984 GCTGAGCCTTCACCACGCGCTTGACCTTGCC-CTCCCTCTCATATTTGGTGTAGAGAGCC 926
Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982
||||| || || ||||| || |||| || || || || | || ||||||| |
Sbjct 925 --TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAG 868
Query 77983 ACCAGTCACCATCTTCCTT-AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 78041
||||||| | | | || |||| ||||| ||||| || || ||||| || || ||
Sbjct 867 ACCAGTCTTGGT-TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTA 810
Query 78042 -AATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100
|| || |||| || ||| || || || || || || ||||| || || || | || ||
Sbjct 809 GAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATC 750
Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160
| | |||| ||||||| || || || || || || | |||| |||| || || ||
Sbjct 749 GAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCC 690
Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220
|||||| || | |||| || ||||| || ||||| |||| ||| || | | |||||
Sbjct 689 TCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTT 630
Query 78221 AGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT 78280
||| | || || || |||| || || || || ||| | || || | | |
Sbjct 629 AGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCAC 570
Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340
|| |||||||| || || || || || ||||| | |||| || || || || ||
Sbjct 569 ACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCC 510
Query 78341 CTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 78400
|| || ||||| ||| ||||| || || || ||||| |||| ||| |
Sbjct 509 TTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGG--------- 459
Query 78401 TCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTA 78460
|||| | | ||||| || || || || || |||||
Sbjct 458 -CCTG---TTGGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTGTA 403
Query 78461 TGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520
|| || || || | || |||| | || ||||| |||| || | ||| | |||
Sbjct 402 GGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGCAT 343
Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580
||||| |||| || || || || || ||||||| ||| ||| |||| |||
Sbjct 342 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGAGT 283
Query 78581 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTT 78640
|| || ||||| ||||||| || || ||||| ||| |||| || | || || ||
Sbjct 282 CTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 223
Query 78641 ATCTTTGTATTTGGTAACAATATCCATGACAGT---AGTTGAAATAATAGGAGATCGTAC 78697
||||| | | |||||| | ||| || | || || || || || |
Sbjct 222 GTCTTTATTCTCCAGAACAATGT---TGAGCGTCTCCTTGGAGATCATGGGGGAGTGGCG 166
Query 78698 ACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttt 78757
||| || || | ||||| | | ||| ||||| || ||||| || | ||| ||
Sbjct 165 TTTATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTTCTT 106
Query 78758 tGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817
||| |||||||| || || || ||||| || | ||||| || || || || || || ||
Sbjct 105 TGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGTG 46
Query 78818 TTGTGTAGTACAAGTGGCTGCTATTTCTGCCGC 78850
|| || || ||||| || || || || ||
Sbjct 45 TTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGC 13
>seq12009
Length=4249
Score = 96.9 bits (106), Expect = 5e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788
||| |||||||| || ||||| || ||||||| || |||||||| || |||||||||||
Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027
Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848
| ||||| | |||||| || || || | || || || ||||| ||||||| |||||
Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967
Query 77849 AAT 77851
||
Sbjct 2966 GAT 2964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692079951732960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |