Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq285305 313 3e-80 seq12009 96.9 5e-15 >seq285305 Length=1559 Score = 313 bits (346), Expect = 3e-80 Identities = 958/1473 (65%), Gaps = 36/1473 (2%) Strand=Plus/Minus Query 77391 GCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTG 77450 || || || || ||||| |||| | |||| || ||||| || ||||||| | ||| Sbjct 1462 GCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTG 1403 Query 77451 AGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAAT 77510 || || || || || |||||||| ||| | | || || ||||| || || ||| Sbjct 1402 AGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAAT 1343 Query 77511 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATA 77570 || || || || || || || || || || | ||| ||||| | | |||||| || | Sbjct 1342 CCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACT 1283 Query 77571 GGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCC 77630 || || | || ||||| || || || || || ||||| |||| |||||| ||| | Sbjct 1282 GGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGG 1223 Query 77631 TTTAGTTTAAGAAAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGAT 77687 ||||| ||| ||||| | | || | || ||||||| | ||| || || Sbjct 1222 GCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGAC 1163 Query 77688 GCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGA 77747 || |||||||| || || ||||||| | ||| |||| | |||||| || || ||| Sbjct 1162 GCCAGATTACAGACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAGAGA 1103 Query 77748 TTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTA 77807 ||||| |||||||| ||||| ||||| || ||||||||||| | ||||| | ||| || Sbjct 1102 TTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTG 1043 Query 77808 TAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 77867 || || || |||| || |||||||| |||| || || ||||| | | ||| || || Sbjct 1042 TAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACAC--CT 985 Query 77868 -CT-AGCTTTTATCA-TAGATTTGTATCGCCTCTCTCTTTCATATT--GAGTATATAGCC 77922 || ||| || | || | || | ||| ||| || ||||||| | ||| | |||| Sbjct 984 GCTGAGCCTTCACCACGCGCTTGACCTTGCC-CTCCCTCTCATATTTGGTGTAGAGAGCC 926 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 ||||| || || ||||| || |||| || || || || | || ||||||| | Sbjct 925 --TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAG 868 Query 77983 ACCAGTCACCATCTTCCTT-AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 78041 ||||||| | | | || |||| ||||| ||||| || || ||||| || || || Sbjct 867 ACCAGTCTTGGT-TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTA 810 Query 78042 -AATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 || || |||| || ||| || || || || || || ||||| || || || | || || Sbjct 809 GAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATC 750 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 | | |||| ||||||| || || || || || || | |||| |||| || || || Sbjct 749 GAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCC 690 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 |||||| || | |||| || ||||| || ||||| |||| ||| || | | ||||| Sbjct 689 TCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTT 630 Query 78221 AGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT 78280 ||| | || || || |||| || || || || ||| | || || | | | Sbjct 629 AGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCAC 570 Query 78281 CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACC 78340 || |||||||| || || || || || ||||| | |||| || || || || || Sbjct 569 ACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCC 510 Query 78341 CTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGT 78400 || || ||||| ||| ||||| || || || ||||| |||| ||| | Sbjct 509 TTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGG--------- 459 Query 78401 TCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTA 78460 |||| | | ||||| || || || || || ||||| Sbjct 458 -CCTG---TTGGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTGTA 403 Query 78461 TGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520 || || || || | || |||| | || ||||| |||| || | ||| | ||| Sbjct 402 GGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGCAT 343 Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 ||||| |||| || || || || || ||||||| ||| ||| |||| ||| Sbjct 342 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGAGT 283 Query 78581 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTT 78640 || || ||||| ||||||| || || ||||| ||| |||| || | || || || Sbjct 282 CTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 223 Query 78641 ATCTTTGTATTTGGTAACAATATCCATGACAGT---AGTTGAAATAATAGGAGATCGTAC 78697 ||||| | | |||||| | ||| || | || || || || || | Sbjct 222 GTCTTTATTCTCCAGAACAATGT---TGAGCGTCTCCTTGGAGATCATGGGGGAGTGGCG 166 Query 78698 ACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttt 78757 ||| || || | ||||| | | ||| ||||| || ||||| || | ||| || Sbjct 165 TTTATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTTCTT 106 Query 78758 tGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 ||| |||||||| || || || ||||| || | ||||| || || || || || || || Sbjct 105 TGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGTG 46 Query 78818 TTGTGTAGTACAAGTGGCTGCTATTTCTGCCGC 78850 || || || ||||| || || || || || Sbjct 45 TTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGC 13 >seq12009 Length=4249 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 ||| |||||||| || ||||| || ||||||| || |||||||| || ||||||||||| Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027 Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 | ||||| | |||||| || || || | || || || ||||| ||||||| ||||| Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967 Query 77849 AAT 77851 || Sbjct 2966 GAT 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692079951732960