Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq285305 320 2e-82 seq12009 91.5 2e-13 >seq285305 Length=1559 Score = 320 bits (354), Expect = 2e-82 Identities = 1007/1550 (65%), Gaps = 40/1550 (3%) Strand=Plus/Minus Query 75911 TCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAA 75970 ||||| | ||||| || || || || ||||| || || || || || ||||| Sbjct 1537 TCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAG 1478 Query 75971 GTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCG 76030 || |||| || | || || ||||| |||||||| | | | |||| || ||||| || Sbjct 1477 GTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCA 1418 Query 76031 AAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATA 76090 ||||||| | || || || || || | || ||||| || ||| | | || || Sbjct 1417 AAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATG 1358 Query 76091 AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATT 76150 || || || || | ||| || || || || || || || || || | ||| ||||| | Sbjct 1357 AAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTC 1298 Query 76151 TCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT 76210 |||||||| || | ||||| | || || || || || || || || ||||| |||| | Sbjct 1297 TCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATT 1238 Query 76211 ACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA---TCACAAACATA 76267 ||||| ||| | ||||| ||| ||||| | | || | || |||| Sbjct 1237 ACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATG 1178 Query 76268 TTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAGCATTGGCATATTGTA 76325 || ||||| || || || |||||||| || || ||||||| | || ||| |||| | Sbjct 1177 TTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGC--TGGTGTATTCAA 1120 Query 76326 TTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTT 76385 |||||| ||||| |||||||| || ||||| || || ||||| || ||||||||||| Sbjct 1119 CTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCC 1060 Query 76386 TGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAA 76445 |||| || | ||| || || || | |||| || || ||||| |||| || || |||| Sbjct 1059 TGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAA 1000 Query 76446 TAGATTTCCAGACGACT-CT-AGCTTTTATTA-TAGATTTGTATCGCTTCTCTCTTTCAT 76502 | | | ||| || || || ||| || | | | || | || ||| || |||| Sbjct 999 TGGCATACCACAC--CTGCTGAGCCTTCACCACGCGCTTGACCTTGC-CCTCCCTCTCAT 943 Query 76503 ATT--GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560 ||| ||||| | | || ||||| || || ||||| || |||| || ||||| || Sbjct 942 ATTTGGTGTAGAGAGCC--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTC 885 Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAAAGAGATCAG 76619 |||||||||||| ||||| || | | | || || | ||||| ||||| || | Sbjct 884 GCTCGGACACATCAGAGACCAGTCTTGGT-TGCTTTCCACTCTCTTCATGAAGAGGTCGG 826 Query 76620 GTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 | ||||| || || || || || |||| || ||| | || || || || || ||||| Sbjct 825 GGATCCACAG-GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTC 767 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 || || || | ||| || | | |||| ||||||| || || || || || || | | Sbjct 766 TTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCT 707 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 || |||| || || |||||||| || | |||| || ||||| || ||||| |||| | Sbjct 706 CCGGGTCTCTTGTTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGC 647 Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGA 76858 || || | | |||||||| | || || || |||| || || || || || | Sbjct 646 ATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTG 587 Query 76859 ATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTC 76918 || || | || | || |||||||| || ||| ||||| || || || | ||| Sbjct 586 ATGCAGCTGACAGCCACACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTC 527 Query 76919 AATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGAC 76978 | |||||||| ||||| || || || || ||| ||||| || || || ||||| ||| Sbjct 526 AGCGTGTCATAAATGCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC 467 Query 76979 ATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTT 77038 | ||| | | ||| | | ||||| || Sbjct 466 AGCTGA----GGCCTGTTGGTTC---------NNNNNNNNNNNNNNNNNNNAACCACTTC 420 Query 77039 TCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACA 77098 || || || || ||||| || || || | || || || | | || ||||| || Sbjct 419 TCTGACAGGAGGTTGTAGGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACC 360 Query 77099 GCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAG 77158 | || | ||| | ||| ||||| ||||| || | || || || ||||||| | Sbjct 359 GACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGG 300 Query 77159 TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATA 77218 || ||| |||| ||| || || ||||| ||||||| || || ||||| ||| |||| Sbjct 299 TAGGATCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATG 240 Query 77219 ATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGT---GGTAGAA 77275 || |||| || || ||| |||| | |||||| | ||| || | || Sbjct 239 ATGGCCGAGTTGAGGCGGTCTTTATTCTCCAGAACAATGT---TGAGCGTCTCCTTGGAG 183 Query 77276 ATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACG 77335 || || || || | | ||| || || | ||||| | | || ||||| ||| Sbjct 182 ATCATGGGGGAGTGGCGTTTATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACG 123 Query 77336 TCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGA 77395 || || || | ||| ||||| |||||||| || || || || || || | ||||| || Sbjct 122 TCACTGAACACTTTCTTTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGG 63 Query 77396 ATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGC 77445 || || ||||| || |||| || ||| ||||| || || || || || Sbjct 62 ATGGCGTAGTCGGGGTGTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGC 13 >seq12009 Length=4249 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 76324 TATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTT 76383 ||| ||||| ||||| ||||| || | ||||| ||||| ||||| || ||||||||||| Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027 Query 76384 TTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGAT 76443 |||| || | |||||| || || | | || || |||||||| ||||||| ||||| Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967 Query 76444 AAT 76446 || Sbjct 2966 GAT 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710277480636480