Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 320 2e-82
seq12009 91.5 2e-13
>seq285305
Length=1559
Score = 320 bits (354), Expect = 2e-82
Identities = 1007/1550 (65%), Gaps = 40/1550 (3%)
Strand=Plus/Minus
Query 75911 TCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAA 75970
||||| | ||||| || || || || ||||| || || || || || |||||
Sbjct 1537 TCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAGAGCCCGGGTACGTCTCGTAG 1478
Query 75971 GTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCG 76030
|| |||| || | || || ||||| |||||||| | | | |||| || ||||| ||
Sbjct 1477 GTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCA 1418
Query 76031 AAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATA 76090
||||||| | || || || || || | || ||||| || ||| | | || ||
Sbjct 1417 AAAATCTGGATGTTGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATG 1358
Query 76091 AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATT 76150
|| || || || | ||| || || || || || || || || || | ||| ||||| |
Sbjct 1357 AAGGCGTCCGCCAATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTC 1298
Query 76151 TCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT 76210
|||||||| || | ||||| | || || || || || || || || ||||| |||| |
Sbjct 1297 TCAGCTTCGGGCACTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATT 1238
Query 76211 ACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTA---TCACAAACATA 76267
||||| ||| | ||||| ||| ||||| | | || | || ||||
Sbjct 1237 ACTTTGGTCACTTGGGCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATG 1178
Query 76268 TTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAGCATTGGCATATTGTA 76325
|| ||||| || || || |||||||| || || ||||||| | || ||| |||| |
Sbjct 1177 TTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCATCCTGGC--TGGTGTATTCAA 1120
Query 76326 TTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTT 76385
|||||| ||||| |||||||| || ||||| || || ||||| || |||||||||||
Sbjct 1119 CTATCTCTGTGCAGAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCC 1060
Query 76386 TGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAA 76445
|||| || | ||| || || || | |||| || || ||||| |||| || || ||||
Sbjct 1059 TGTTGCAGGCGTCTTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAA 1000
Query 76446 TAGATTTCCAGACGACT-CT-AGCTTTTATTA-TAGATTTGTATCGCTTCTCTCTTTCAT 76502
| | | ||| || || || ||| || | | | || | || ||| || ||||
Sbjct 999 TGGCATACCACAC--CTGCTGAGCCTTCACCACGCGCTTGACCTTGC-CCTCCCTCTCAT 943
Query 76503 ATT--GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560
||| ||||| | | || ||||| || || ||||| || |||| || ||||| ||
Sbjct 942 ATTTGGTGTAGAGAGCC--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTC 885
Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAAAGAGATCAG 76619
|||||||||||| ||||| || | | | || || | ||||| ||||| || |
Sbjct 884 GCTCGGACACATCAGAGACCAGTCTTGGT-TGCTTTCCACTCTCTTCATGAAGAGGTCGG 826
Query 76620 GTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678
| ||||| || || || || || |||| || ||| | || || || || || |||||
Sbjct 825 GGATCCACAG-GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTC 767
Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738
|| || || | ||| || | | |||| ||||||| || || || || || || | |
Sbjct 766 TTCAGCTCCAAGAAATCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCT 707
Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798
|| |||| || || |||||||| || | |||| || ||||| || ||||| |||| |
Sbjct 706 CCGGGTCTCTTGTTGCCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGC 647
Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGA 76858
|| || | | |||||||| | || || || |||| || || || || || |
Sbjct 646 ATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTG 587
Query 76859 ATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTC 76918
|| || | || | || |||||||| || ||| ||||| || || || | |||
Sbjct 586 ATGCAGCTGACAGCCACACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTC 527
Query 76919 AATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGAC 76978
| |||||||| ||||| || || || || ||| ||||| || || || ||||| |||
Sbjct 526 AGCGTGTCATAAATGCCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC 467
Query 76979 ATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTT 77038
| ||| | | ||| | | ||||| ||
Sbjct 466 AGCTGA----GGCCTGTTGGTTC---------NNNNNNNNNNNNNNNNNNNAACCACTTC 420
Query 77039 TCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACA 77098
|| || || || ||||| || || || | || || || | | || ||||| ||
Sbjct 419 TCTGACAGGAGGTTGTAGGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACC 360
Query 77099 GCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAG 77158
| || | ||| | ||| ||||| ||||| || | || || || ||||||| |
Sbjct 359 GACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGG 300
Query 77159 TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATA 77218
|| ||| |||| ||| || || ||||| ||||||| || || ||||| ||| ||||
Sbjct 299 TAGGATCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATG 240
Query 77219 ATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGT---GGTAGAA 77275
|| |||| || || ||| |||| | |||||| | ||| || | ||
Sbjct 239 ATGGCCGAGTTGAGGCGGTCTTTATTCTCCAGAACAATGT---TGAGCGTCTCCTTGGAG 183
Query 77276 ATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACG 77335
|| || || || | | ||| || || | ||||| | | || ||||| |||
Sbjct 182 ATCATGGGGGAGTGGCGTTTATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACG 123
Query 77336 TCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGA 77395
|| || || | ||| ||||| |||||||| || || || || || || | ||||| ||
Sbjct 122 TCACTGAACACTTTCTTTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGG 63
Query 77396 ATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGC 77445
|| || ||||| || |||| || ||| ||||| || || || || ||
Sbjct 62 ATGGCGTAGTCGGGGTGTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGC 13
>seq12009
Length=4249
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 76324 TATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTT 76383
||| ||||| ||||| ||||| || | ||||| ||||| ||||| || |||||||||||
Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027
Query 76384 TTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGAT 76443
|||| || | |||||| || || | | || || |||||||| ||||||| |||||
Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967
Query 76444 AAT 76446
||
Sbjct 2966 GAT 2964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 710277480636480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |