Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14 488 6e-133 >seq14 Length=13523219 Score = 488 bits (540), Expect = 6e-133 Identities = 1283/1945 (66%), Gaps = 25/1945 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 || || ||||| || |||| | | |||||| || | || | || ||||| || || Sbjct 9107219 TTTTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 9107160 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| ||||| |||| || || || ||||| || || ||||| || | || Sbjct 9107159 ACGATCTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 9107100 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 9107099 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 9107040 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | ||| || || || || | | ||| | ||| || Sbjct 9107039 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCCACAGG 9106980 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGC-GTACGAT 53383 || | || | | | || || || || || ||| | | || | Sbjct 9106979 TCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGAC-AG 9106923 Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | ||||| ||||| || || || | || || || || |||||||| | || Sbjct 9106922 CCTTCGTATGTCTCGTAGGGGCCCAACTCGGCTGCCAGCTCGCAGCTCGCCTCCAGGGCG 9106863 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 |||| || ||||| || ||||||| | || || || || || |||| ||||| Sbjct 9106862 GCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGAGCCTCTGGGCTTTCAAAG 9106803 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 || ||| | || || || ||||| || || || || || || || || || || || Sbjct 9106802 GGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATTCCAATTGGCCTG 9106743 Query 53564 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 || | ||| || || | ||||| || || | || || || ||||| ||||| || || Sbjct 9106742 TGGCGCTTGTTGGACTTATCAGCCTCGGGCACTGGGTAGTAGTTAATCTCTATGATCTTG 9106683 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA 53683 || ||||| |||| || |||||| |||| || |||||| || ||||| |||| Sbjct 9106682 TTCAGGTTCTTGACGATAACTTTGGTCACAGACTCCAGTTTTTTGAAGTCAAAA-GTCCG 9106624 Query 53684 -TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 || | || ||||||| | || || || ||||||||||| ||||| ||||||| Sbjct 9106623 CTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAGACGGCGACCTCATC 9106564 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 || | |||| | || || ||||| || || || || |||||||| || | ||| Sbjct 9106563 GTCACTGGTGTATTCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAAGATT 9106504 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 ||||| || ||||| |||| || || || || || || ||| | || ||||| || || Sbjct 9106503 CTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTCTC 9106444 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919 ||||||| || || | || | ||| | ||||||| | | | ||| | Sbjct 9106443 CGTCTGGGACTCGATGACGGCGTGCCACAGCTGCTGAGCCTTCACAACACGCTTGACCCG 9106384 Query 53920 CTTTTCTCTTTCGTATA----GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT 53975 | ||| ||| ||| ||||| | || |||||||| || ||||| | || Sbjct 9106383 CCC--CTCCTTCTCATACTGGGTGTAGAGCTTC--TCAAACTCCTCCCCCCAGCACTCGT 9106328 Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035 ||| || || || || |||||||||| ||||| || || || |||| | Sbjct 9106327 CCAGCCCGGGGCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCGACTCTCT 9106268 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 54094 |||| || | || || ||||| | ||| || || |||||||||| ||| || ||||| Sbjct 9106267 TCATGAACAAGTCGGGGATCCACA-AGCCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCC 9106209 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || ||||| ||||| || || || ||||| | | | ||| | ||||| || |||| | Sbjct 9106208 TTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGG 9106149 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | | || || | ||||| || ||||| || | || | || ||||| Sbjct 9106148 TACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTTG 9106089 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || || ||||||| ||| || | | || || || || ||||| || | || ||| Sbjct 9106088 TTGTAGACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTAG 9106029 Query 54275 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 || || | | | || || | | | || || || || || || ||||| Sbjct 9106028 CTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGACTTGGAGATG 9105969 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | || || | || | ||| ||||| ||||| || || || |||||| ||||| | || Sbjct 9105968 AGGGCACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCATGGTGAGC 9105909 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || ||||| |||| || | | | ||||| || || || | |||||||| ||| Sbjct 9105908 AGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGAGACGCG 9105849 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 || || ||||| || || || || || ||||| |||||||| || | ||| ||| | | Sbjct 9105848 TGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATAGCTGTT 9105789 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 | || || || || || || | ||| | ||||||||| || | || | | ||| | Sbjct 9105788 TTGTGGATACCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCG 9105729 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || || |||||||||||||| |||| ||| || || ||||| ||||||| || || Sbjct 9105728 TTGATCTTCAGCAAGTAGGAACGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAA 9105669 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 54694 |||| ||| |||| || | |||||||| || || | || ||| | || | | Sbjct 9105668 TCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTTTCAAGAACGATGTCGAGG 9105609 Query 54695 GTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 || | ||| || || || || || || | ||| ||| ||||| ||||| || | Sbjct 9105608 GT-CTCCTTGGAGATCATAGGGGAGTGGCGTCTATTCAGAGGGTTGACGTAGTTGAACAG 9105550 Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 |||| |||||| ||||| || | ||| ||||| || ||||| || || || ||||| || Sbjct 9105549 GTCCTCCATCACCTCACTGAACACTTTCTTTGTCTCCTTGTGCAGGTTGGAGACGGCGAT 9105490 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 54873 | || || || |||||||| || || |||| || || ||||| || || || || Sbjct 9105489 CCGTGCAGCGAGGATGGCATAGTCTGGGTGTTTGGTCGTGAGGGTGGCAGCGATCTCTGC 9105430 Query 54874 TGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 | ||||||||| | || || || || || ||| | || | || ||||| |||||||| Sbjct 9105429 AGCCAGAGTGTCGAGCTCCACTGTGGTGACACCACTGTACAGACCCTGGATCACCTTCAT 9105370 Query 54934 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATAC 54992 | || | | | ||||| | |||| ||| | ||||| || || |||| |||| Sbjct 9105369 TGTGATCTGAGTTGGATCCACGAAGTCAGAGTTCAGCCCATAGCA-AAGCTTCTGGATAC 9105311 Query 54993 GAGATGTGATTTTATCAAACATGAC 55017 |||| ||||||||||| |||||||| Sbjct 9105310 GAGAGGTGATTTTATCGAACATGAC 9105286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593650910022000