Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 176 5e-39 seq6597 114 1e-20 >seq7 Length=16146599 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || ||||| ||| Sbjct 1869543 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 1869602 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| ||||| | ||||||||||||||||| | |||||| Sbjct 1869603 GACACCATTGAAAATGTTAAGGCCAAAATCCAGGACAAAGAGGGCATCCCTCCAGACCAG 1869662 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| |||||||| |||| ||||| ||| |||||||||| Sbjct 1869663 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 1869722 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| || ||||| || ||||| |||| || || Sbjct 1869723 ATCCAGAAAGAGTCCACCCTCCATCTGGTCTTGCGTCTGAGAGGAGG 1869769 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || || || |||||||| | || ||||| || Sbjct 1869312 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCC 1869371 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||| | || || | || || || |||||||| | ||| Sbjct 1869372 AGTGACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCTGAC 1869431 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || || | || ||||| |||||||| |||| |||||||| || ||| Sbjct 1869432 CAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCAGATTAC 1869491 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| |||| || ||||| ||| | ||| |||| || || Sbjct 1869492 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGCCTGAGAGGAGG 1869541 >seq6597 Length=1954 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||||||||||||||| || ||||| ||||||| || || ||||| Sbjct 360 GGAGAGCGGGTGGTGGCCTTCGCGGCAGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 301 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| | || ||||||||||||||||| ||| |||||||||| Sbjct 300 TCCATCTTCTGGCTGAAGAAGAGAGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTC 241 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| || |||| Sbjct 240 ATCAGCAGAGATGAGG 225 Score = 113 bits (124), Expect = 5e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || | ||||| ||||||||| ||||||| ||||| ||||| || || || Sbjct 756 GGTGGAGCGCTTTACGCAGGAAGTGCAGGTGACCGAGGCCCGGTGTTTCTATGGTTTCCA 697 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | |||||||| |||||| ||||||||||||||| Sbjct 696 GATCGCCATGGAGAACATCCACTCGGAGATGTATAGCCTTCTCATCGACACGTAC 642 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| || ||||| | || ||||| || |||||||| || |||| ||| Sbjct 1172 GAGCCGCTGCTGAAAGAAAACCCGCAGCGCTTCGTCATCTTCCCCATCCAGTACCATGAC 1113 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||||| |||||||| Sbjct 1112 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGGT 1060 Score = 100 bits (110), Expect = 3e-16 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 116678 GTCGAGGAGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGA 116736 |||| | |||| |||||||| ||||| | ||| |||||||| |||| || | || Sbjct 979 GTCGCGCAGGTCGACCTGTCAAAGGATCTGCAGC-ACTGGGAGTCTCTGAAGGAGGAGGA 921 Query 116737 GCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGA 116796 | | | |||||| |||||| |||| || ||||||||||||||||||||||||||||| Sbjct 920 GAGGTACTTCATCTCTCACGTGTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTCAACGA 861 Query 116797 GAATCTGGT 116805 ||| ||||| Sbjct 860 GAACCTGGT 852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515157856714000