Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7 152 4e-32 seq14 150 2e-31 >seq7 Length=16146599 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | | | ||| |||| |||| || |||||||| || |||||||| ||| Sbjct 1869771 TACCTCCTCTCAGACGCAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGG 1869712 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| || || ||||| || || ||| |||||||||||||||| || |||| Sbjct 1869711 AGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAG 1869652 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||| ||||| ||||| ||||| | ||| | |||||| || ||||| Sbjct 1869651 GGATGCCCTCTTTGTCCTGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGA 1869592 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || ||||||||||| ||||| ||||| |||||||| Sbjct 1869591 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||||||||| || ||||| ||| || ||||| ||| || | Sbjct 1869978 CAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCA 1869919 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||| || | |||||| || ||||| ||||| ||||| || | Sbjct 1869918 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGA 1869859 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | |||||| || ||||||||| | || | || |||| Sbjct 1869858 TCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGAGTGATGGTCTTGC 1869799 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || ||||| |||||||| Sbjct 1869798 CTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || ||||||||||| || ||||| || || | Sbjct 1869522 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCGTCTTCCA 1869463 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| | || || | |||||| || ||||| ||||| ||||| || | Sbjct 1869462 GCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGA 1869403 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | |||||| || ||||||||| | || | || || | Sbjct 1869402 TCTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAAGTGATGGTCTTAC 1869343 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||||| |||||||| Sbjct 1869342 CAGTCAGGGTCTTCACAAAGATCTGCAT 1869315 >seq14 Length=13523219 Score = 150 bits (166), Expect = 2e-31 Identities = 491/747 (66%), Gaps = 28/747 (4%) Strand=Plus/Minus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | |||||||| |||| || || | | | || | Sbjct 9107179 CTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGA 9107120 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | | |||| || ||||||||||| || ||||| || || | |||| Sbjct 9107119 TGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 9107060 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| |||| || || ||| || ||||||| |||| || || || || Sbjct 9107059 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCA 9107000 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 |||||||||||||| | | ||| || | ||||| | | | || || Sbjct 9106999 GCAGCTTCCAGTCCCACAGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT 9106952 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | || | || ||| |||| || |||| | | ||| | || ||||| || | Sbjct 9106951 ---ACTGGAGGATGCCCTTGCTGACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCA--A 9106897 Query 133507 TTTTG--GCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TG 133563 | | |||||||||||||| ||||||| ||||| |||| ||||| || ||| || Sbjct 9106896 CTCGGCTGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTG 9106837 Query 133564 AATAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGC 133621 || ||| | | | ||| || || ||| || ||| | | || | || | || || Sbjct 9106836 GAT-GTTCA-GCAGCTGAGCCTCTGGGCTTTCAAAGGGG-TAACGCATCAGGATGAAGGC 9106780 Query 133622 GTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGA 133681 ||||||||||||||| | ||||| || || || | || || ||| | | || | Sbjct 9106779 GTCGGCCAAACCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAGC 9106720 Query 133682 CTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTT 133741 ||||| | || |||| ||| | || ||||||||||| || || |||||||| ||| Sbjct 9106719 CTCGGGCACTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACTTT 9106660 Query 133742 AGTCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTT 133801 |||| | | ||| ||||||| ||| || ||| | |||| || |||| Sbjct 9106659 GGTCACAGACTCCAGTTTTTTGAAGTCAAAAGTCC--GC-TCGGGGGTGACGTACATGTT 9106603 Query 133802 GACGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGAT 133861 || || || ||| |||||||| ||||| ||| | || | || | ||||| Sbjct 9106602 GAGAGCGATGGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGAT 9106543 Query 133862 CTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATT 133921 |||| ||||||||||||||||||||||||||| | ||| | ||| ||||| | || Sbjct 9106542 TTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTT 9106483 Query 133922 GCAATGATCCTTGTATAGCATGTACGG 133948 ||| || ||||| ||||||||||| Sbjct 9106482 GCAGGCGTCTTTGTACAGCATGTACGG 9106456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433780038391300