Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4 291 6e-74 seq40 91.5 1e-13 >seq4 Length=20050102 Score = 291 bits (322), Expect = 6e-74 Identities = 454/640 (71%), Gaps = 8/640 (1%) Strand=Plus/Minus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| |||| ||| || || |||||||||||||| |||||| |||||||||| |||||| Sbjct 7217813 AGTGAAGAGGAGAATGATTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAAATTGAA 7217754 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | ||||| || || || ||||| | ||||| ||||||||||| |||||||| |||||| Sbjct 7217753 ATGTTTGAGCGACTTCTTCGAGCACTTTATGCACCTCAGAACATCTACTGTGTGCACGTG 7217694 Query 107814 GATGTGAAGTCC-CCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 || |||||| ||| ||| |||| ||||| || |||| ||| || |||| ||||| Sbjct 7217693 GACCAAAAGTCCTCCAAAGA-TTTCCGGGAGGCCGTGCAGGCTATTGTTGCCTGTTTCCC 7217635 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 |||||| || || || ||||| | | ||| |||||||||| |||||| | ||||| Sbjct 7217634 CAATGTGTTTATAGCTAGTAAATCAGAGAGTGTGATTTATGCCTCATGGTCCCGTGTGCA 7217575 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACT 107992 || || |||||||| ||| ||| || | || | || |||| |||| | || Sbjct 7217574 GGCAGATCTGAACTGCATGACAGATCTGTTGAAGTCACCCGTAAAGTGGAGGTACCTGCT 7217515 Query 107993 GAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAA 108052 || ||||| ||||| |||||||| ||||| ||||||| |||||||| | ||||| Sbjct 7217514 CAACACATGTGGGACCGACTTCCCGATAAAAACCAATGGAGAGATGGTTAAAGTACTCAA 7217455 Query 108053 GATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCG 108112 ||| | || || | |||||||||||| |||||| | ||| | ||| ||| || Sbjct 7217454 GATTCTAAATGGAAGAAACAGTATGGAGACTGAGGCGGCCAATGACTACAAGAAAGGCCG 7217395 Query 108113 CTGGAAATACCGCTATGAGGTGACAGACACACTGT-ACCCTACCAG-CAAGATGAAGGAC 108170 ||| | || | | | || ||| || ||| | | ||| |||||| Sbjct 7217394 TTGGCAGTATCATCACAATGTTGCAG--ACGGTGTCATCAGGACAGATGTGATGAAAAGT 7217337 Query 108171 CCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGC 108229 ||||| || ||| | ||| ||||||||||||||||||||| |||||| ||| |||| Sbjct 7217336 CCTCCACC-GATTAGCAGCCCGATGTTCACAGGGAATGCCTATGTTGTGGTCTCAAGAGC 7217278 Query 108230 CTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGA 108289 |||||| |||||| | | || | | || | ||| | || ||||| || || Sbjct 7217277 CTTTGTGACACATGTGATGCAGGACACAGAGGTTCAGAAACTCCTGGAGTGGGTGAAGGA 7217218 Query 108290 CACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAG 108329 ||| || ||||| ||||| ||| | |||||||| || ||| Sbjct 7217217 CACATACAGCCCTGACGAGCACTTGTGGGCCACTCTACAG 7217178 >seq40 Length=3745015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 203/298 (68%), Gaps = 15/298 (5%) Strand=Plus/Plus Query 108269 ACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 |||| ||||||||| ||||||||||| || || || ||| |||||||| ||| |||| Sbjct 2940371 ACTGATTGAATGGGCGAAAGACACCTACAGTCCTGATGAATTTCTCTGGGCAACCATTCA 2940430 Query 108329 GCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGAC 108386 ||| ||| ||| | || |||||||| | || ||| ||| |||| |||||| Sbjct 2940431 GCGAATGC-CCG-GAATTCCTGGCTCAAAACGGCCGCATATCAAATATGACATGTCAGAC 2940488 Query 108387 ATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCAT---G 108443 | | ||| ||| | | || || |||||||||| ||||||| | | ||| || Sbjct 2940489 CTCAATGCTATCACTCGCCTGGTGAAGTGGCAGTTTCACGAGG--GGTCGCAGGATTCAC 2940546 Query 108444 GGGGCGCCTTATGCACCC----TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGG 108499 | ||| || |||| || || | ||| ||| | || || || || || Sbjct 2940547 TGAACGC--AGTGTACCCAGAGTGTCAAGGCAACCACGTCAGGTCAATATGTATATATGG 2940604 Query 108500 GGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | |||||||| | ||||| ||| || ||||||| ||||| || |||||||||||| Sbjct 2940605 TGTTGGGGACCTACAGTGGATGCTCGAGCACCATCATCTCTTTGCCAACAAGTTTGAC 2940662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348228370889850