Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq14 434 9e-117 seq11 118 9e-22 seq7 102 7e-17 >seq14 Length=13523219 Score = 434 bits (480), Expect = 9e-117 Identities = 1034/1555 (66%), Gaps = 37/1555 (2%) Strand=Plus/Minus Query 22397 TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTC 22456 ||||| ||| ||| |||||| || | | |||| ||||||| ||||||| |||| Sbjct 9107219 TTTTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 9107160 Query 22457 ACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 || | |||||||| ||||||| ||| | ||| ||| |||||| ||| | | ||| Sbjct 9107159 ACGATCTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 9107100 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 | || || ||||| ||||| ||||| ||||| || || || |||||||| |||| ||| Sbjct 9107099 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 9107040 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636 || ||| |||| ||||||||| | || || ||| |||| | |||||||||||| Sbjct 9107039 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCCACAGG 9106980 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTG 22696 |||| |||||| || |||||||| ||||| || | | ||| || | || | | Sbjct 9106979 TCGGTGGGCGTC---TTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGACAG 9106923 Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 |||||||| || ||||| || || | || || || |||||||||||||||| ||| Sbjct 9106922 CCTTCGTATGTCTCGTAGGGGCCCAACTCGGCTGCCAGCTCGCAGCTCGCCTCCAGGGCG 9106863 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC-----GCTTT 22811 |||| || || ||||| ||||| | |||||| || || | | | ||||| Sbjct 9106862 GCGTAGTAGATGGTCTCAAAGATCTGGATGTTCA-----GCAGCTGAGCCTCTGGGCTTT 9106808 Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 | | || |||||||| | ||| ||||| |||| |||||| ||||| || || || | Sbjct 9106807 CAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATTCCAATTG 9106748 Query 22872 GTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGAT-T 22930 | | || | || ||| | |||||||||| || || | || |||| | | Sbjct 9106747 GCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGGCACTGGGTAGTAGTT--AATCTCTAT 9106690 Query 22931 GTTCT-GTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | ||| ||||| ||| || | || ||| || | | ||||| | Sbjct 9106689 GATCTTGTTCAGGTTCTTGACGATAACTTTGGTCACAGACTCCAGTTTTTTGAAGTCAAA 9106630 Query 22990 AA--CGCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCC 23047 | ||| || || || || |||||| ||||| ||||| ||||| || ||||| Sbjct 9106629 AGTCCGCTCGGGGGTG--ACGTACATGTTGAGAGCGATGGAGGCCAGATTACAGACGGCG 9106572 Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| || | ||||| || || |||||||| || || ||||| || || || ||| Sbjct 9106571 ACCTCATCGTCACTGGTGTATTCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTG 9106512 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | ||| |||||||| || | ||||| | || ||||| ||||||||||| || Sbjct 9106511 CCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTA 9106452 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGC 23227 |||||||| ||| |||||||||| || |||||| |||||| | ||| ||| Sbjct 9106451 CCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCACAGCTGCTGAGCCTTCACAACACGC 9106392 Query 23228 ACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287 | || || || | ||| |||| ||| | | ||||| || | || | || Sbjct 9106391 TTGACCCGCCCCTCCTTCTCATACTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCAC 9106332 Query 23288 TCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACG 23347 ||| |||| ||||| | | | |||||||| ||| ||| || | || || Sbjct 9106331 TCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCGACT 9106272 Query 23348 CGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCC 23407 | |||| || | || || ||||| | ||||||| || || | ||| | |||| Sbjct 9106271 CTCTTCATGAACAAGTCGGGGATCCACAAGCCGTAGAAAAGATCTCTGGCTCTTTGCTCC 9106212 Query 23408 TCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCG 23467 || || || |||||||| |||| |||| ||||| |||||||| ||||| ||||| Sbjct 9106211 TCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCC 9106152 Query 23468 AGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTG 23527 ||||| | ||| || || || |||||||| ||||||||||| ||||| || || |||||| Sbjct 9106151 AGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTG 9106092 Query 23528 TTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA-- 23585 |||||||| ||||| ||||| || || || ||||| || |||| ||| || | Sbjct 9106091 TTGTTGTAGACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATG 9106032 Query 23586 -CACTCGAACCTTTTGCTCGAACGTTG-TGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643 ||| || ||| || | | | ||| || | || || ||||| | || || Sbjct 9106031 TAGCTC---CCCGTTGATCTGATGCAGCTGACCG-CCACGCCGATTCCTCCAGCTGACTT 9105976 Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703 || || | || || || ||||| ||||| || ||||| ||||||||||| || || | Sbjct 9105975 GGAGATGAGGGCACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCAT 9105916 Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 | || || ||| || |||| || | || || | || ||| || || || Sbjct 9105915 GGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGG 9105856 Query 23764 GCTGGCGTGCGTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCAT 23819 ||||| || || ||| ||| || | || ||||| || ||||||||||| | Sbjct 9105855 AGACGCGTGGGTGAA----CCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCGGCGT 9105800 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 | || | | ||| ||||| | || || | ||| | ||||| || || | |||| Sbjct 9105799 CGATAGCTGTTTTGTGGATACCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGG 9105740 Query 23880 CCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 || |||||| || || | || || ||||| | || || || || ||||| Sbjct 9105739 CCACTTTGCCGTTGATCTTCAGCAAGTAGGAACGCTCCAGAGTCTTGAAGCCAAA 9105685 >seq11 Length=13916851 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| |||||||| || || || || || |||||||| | || || || Sbjct 4879608 CACCTCATCTTTGCTTGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGT 4879549 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| || || Sbjct 4879548 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGT 4879489 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||| || ||| ||||||||||| || |||||| Sbjct 4879488 TCCCGTTTCTGTCTGTGACTCGATGATGGCATGCCACA 4879451 Score = 86.0 bits (94), Expect = 6e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| ||||| ||||| ||||||||||| ||||||||||||||||||| ||||| || || Sbjct 4878689 CTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTACACTCGAAGCATGGGAAC 4878630 Query 23554 GAGACCGTTGGA 23565 || |||||||| Sbjct 4878629 AAGCCCGTTGGA 4878618 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| | Sbjct 8402464 CAAACATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGC 8402523 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | |||| ||||| | || ||||||||||||| | || || | Sbjct 8402524 CCAGTGACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAG 8402583 Query 31308 ACCAGCAGCGTCTAATATTCGCTGG 31332 | |||||| | || || || ||||| Sbjct 8402584 ATCAGCAGAGGCTGATCTTTGCTGG 8402608 >seq7 Length=16146599 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || ||||| ||||| || |||||| | || || || || Sbjct 1869543 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 1869602 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| |||||| || ||| | || || |||||| Sbjct 1869603 GACACCATTGAAAATGTTAAGGCCAAAATCCAGGACAAAGAGGGCATCCCTCCAGACCAG 1869662 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| |||||||| ||| | ||| || ||| Sbjct 1869663 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 1869722 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || |||||||| | | ||||| || |||| Sbjct 1869723 ATCCAGAAAGAGTCCACCCTCCATCTGGTCTTGCGTCTGAGAGGAGGTA 1869771 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| || ||||| | || || || || | Sbjct 1869771 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTGGAGGTCGAGCCCAGC 1869830 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||| ||||||||| | || || |||||| Sbjct 1869831 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1869890 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| ||||||| || || ||| || || Sbjct 1869891 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 1869950 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||| || || || ||||| || || | ||||| || || Sbjct 1869951 ATCCAAAAAGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGAGGAGG 1869997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445713325938000