Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq6597 86.0 1e-11 seq14 86.0 1e-11 seq45 84.2 4e-11 >seq6597 Length=1954 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||| || ||||| || ||||||||||| |||| | ||||| ||||| |||||| Sbjct 348 GTGGCCTTCGCGGCAGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTTCCATCTTCTGG 289 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 | ||||| || ||| | |||| || || |||| |||||| ||| |||| Sbjct 288 CTGAAGAAGAGAGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCAT 239 >seq14 Length=13523219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 172/255 (67%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 94785 GCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACC 94844 ||||| ||||||||| | ||||||||||| || || ||| || || |||||||| || Sbjct 9105996 GCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAATGCC 9105937 Query 94845 CTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGT 94904 || ||||| ||||| | | | || |||||||| ||| || || || || || Sbjct 9105936 GTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGT 9105877 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| || || || || || || || ||||| || | | | || | || | || Sbjct 9105876 TCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTA 9105817 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 || || ||| | | | ||| ||| | ||| || || |||||||| | ||| | ||| Sbjct 9105816 GGTCTCGATGGCGGCGTCGATAGCTGTTTTGTGGATACCAACAGCCACTCTCATGAGCAT 9105757 Query 95025 GTCCTGAGGGCGCTC 95039 || ||| || ||||| Sbjct 9105756 GTGCTGCGGCCGCTC 9105742 >seq45 Length=2253462 Score = 84.2 bits (92), Expect = 4e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 101914 AATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973 |||||| || |||||||| || || ||||||||||| ||| ||||||| |||| || Sbjct 2024704 AATTGTGGCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCCGGTTCATTCGCTGCCATCTT 2024645 Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 ||| | ||||| || || | ||||||| || |||| |||||||||| Sbjct 2024644 TTGGCTGAAGAAGAGAGGATTAATGCCTGGGCTTACCTTCTCCAATGAG 2024596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989463232096375