Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14 495 5e-135 seq6597 96.9 4e-15 seq45 96.9 4e-15 >seq14 Length=13523219 Score = 495 bits (548), Expect = 5e-135 Identities = 1284/1946 (66%), Gaps = 27/1946 (1%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 || || ||||| || |||| | | |||||| || | || | || ||||| ||||| Sbjct 9107219 TTTTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 9107160 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || ||||| |||| || || || ||||| || || ||||| || | || Sbjct 9107159 ACGATCTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 9107100 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 9107099 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 9107040 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | |||| | ||| || || || || | | ||| | ||| || Sbjct 9107039 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCCACAGG 9106980 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GT 62616 || | || | | ||| || || || || || || ||| | | Sbjct 9106979 TCGGTGGGCGTCTTCTCCCACATGTCG-------TACTGGAGGATGCCCTTGCTGACAGG 9106927 Query 62617 ACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTA 62676 || | ||| | ||||| || || || || || | || || | || |||||||| | Sbjct 9106926 AC-AGCCTTCGTATGTCTCGTAGGGGCCCAACTCGGCTGCCAGCTCGCAGCTCGCCTCCA 9106868 Query 62677 ATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTAT 62736 || |||| || ||||| |||||||||| | || || || || || ||||| | Sbjct 9106867 GGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGAGCCTCTGGGCTTT 9106808 Query 62737 CAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAG 62796 |||| || ||| | || || || ||||| || || || || || || || || || | Sbjct 9106807 CAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATTCCAATTG 9106748 Query 62797 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62856 | || || | ||| || || | ||||| || || | || || || ||||| ||||| | Sbjct 9106747 GCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGGCACTGGGTAGTAGTTAATCTCTATGA 9106688 Query 62857 TTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62916 | || || || || |||| || |||||| |||| || |||||| || ||||| Sbjct 9106687 TCTTGTTCAGGTTCTTGACGATAACTTTGGTCACAGACTCCAGTTTTTTGAAGTCAAAAG 9106628 Query 62917 GCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCT 62973 || || | || ||||||| | || | || ||||||||||| ||||| |||| Sbjct 9106627 TCCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAGACGGCGACCT 9106568 Query 62974 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTA 63033 ||| || | |||| | || || ||||| || || || || ||||| || || | Sbjct 9106567 CATCGTCACTGGTGTATTCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAA 9106508 Query 63034 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 63093 ||| ||||| || ||||| |||| || || || || || || ||| | || ||||| | Sbjct 9106507 GATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCG 9106448 Query 63094 TTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTG 63152 | || |||| || || || | || | ||| | | || ||||||| | | | ||| Sbjct 9106447 TCTCCGTCTGGGACTCGATGACGGCGTGCCACAGCTGCT-GAGCCTTCACAACACGCTTG 9106389 Query 63153 TATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 63212 | || || | || || | || || | || ||||| || ||||| | | Sbjct 9106388 ACCCGCCCCTCCTTCTCATACTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCG 9106329 Query 63213 TCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63272 |||| | || || || |||||||||| ||||| || || || |||| Sbjct 9106328 TCCAGCCCGGGGCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCGACTCTC 9106269 Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTC 63331 ||||| || | || || ||||| | ||| || || |||||||| | ||| || ||||| Sbjct 9106268 TTCATGAACAAGTCGGGGATCCACA-AGCCGTAGAAAAGATCTCTGGCTCTTTGCTCCTC 9106210 Query 63332 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63391 || ||||| ||||| || || || ||||| | | | ||| | ||||| || |||| Sbjct 9106209 CTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAG 9106150 Query 63392 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63451 ||| ||||| | | || || | ||||| || ||||| || | || | || ||||| Sbjct 9106149 GTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTT 9106090 Query 63452 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 || || ||||||| ||| || | | |||||||| | || ||||| || | || || Sbjct 9106089 GTTGTAGACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTA 9106030 Query 63512 GCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 || || | | | || || | | | || ||||| || || || ||||| Sbjct 9106029 GCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGACTTGGAGAT 9105970 Query 63572 TAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAG 63631 | || || | || | ||||||||| ||||| || ||||| ||||| ||||| | || Sbjct 9105969 GAGGGCACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCATGGTGAG 9105910 Query 63632 TAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691 || || ||||| |||| || | | | ||||| || || || | |||||||| || Sbjct 9105909 CAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGAGACGC 9105850 Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63751 ||| || ||||| || || || || || ||||| ||||| || || | ||| ||| | Sbjct 9105849 GTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATAGCTGT 9105790 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 || || || || || || || | ||| | ||||||||| || | || | | |||| Sbjct 9105789 TTTGTGGATACCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCC 9105730 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63871 ||| || |||| ||||||||| |||| ||| || || ||||| ||||||| || || Sbjct 9105729 GTTGATCTTCAGCAAGTAGGAACGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 9105670 Query 63872 GTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT 63931 |||| ||| |||| || |||| ||||| || || | || ||| || || | Sbjct 9105669 ATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTTTCAAGAACGATGTCGAG 9105610 Query 63932 GGTAATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATA 63990 ||| | |||| | || || || || || | ||| ||| || || |||||||| | Sbjct 9105609 GGTC-TCCTTGGAGATCATAGGGGAGTGGCGTCTATTCAGAGGGTTGACGTAGTTGAACA 9105551 Query 63991 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTA 64050 ||||||||||| ||||| || | ||| ||||| |||||||| || || || | ||| | Sbjct 9105550 GGTCCTCCATCACCTCACTGAACACTTTCTTTGTCTCCTTGTGCAGGTTGGAGACGGCGA 9105491 Query 64051 TTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 64110 | | || || || |||||||| || || |||| || || ||||| || || || | Sbjct 9105490 TCCGTGCAGCGAGGATGGCATAGTCTGGGTGTTTGGTCGTGAGGGTGGCAGCGATCTCTG 9105431 Query 64111 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 | ||||||||||| | || || || || || ||| | || | || || || ||||||| Sbjct 9105430 CAGCCAGAGTGTCGAGCTCCACTGTGGTGACACCACTGTACAGACCCTGGATCACCTTCA 9105371 Query 64171 TAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTA-ATA 64229 | | || | | | ||||| | || | ||| | |||||||| || |||| ||| Sbjct 9105370 TTGTGATCTGAGTTGGATCCACGAAGTCAGAGTTCAGCCCATAGCA-AAGCTTCTGGATA 9105312 Query 64230 CGAGACGTGATTTTATCAAACATGAC 64255 ||||| ||||||||||| |||||||| Sbjct 9105311 CGAGAGGTGATTTTATCGAACATGAC 9105286 >seq6597 Length=1954 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||||| || || || || |||||||| || || | ||| | Sbjct 225 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTCTCTTCT 284 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||||||||| || || || ||||||||||| || ||||| || |||| Sbjct 285 TCAGCCAGAAGATGGAAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCCGCGAAGG 344 Query 33724 C 33724 | Sbjct 345 C 345 >seq45 Length=2253462 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || || || | || || || || || || || ||||||| || | ||| | Sbjct 2024577 CCTCATCCCTGCTGATCAGCTCATTGGAGAAGGTAAGCCCAGGCATTAATCCTCTCTTCT 2024636 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| |||| ||||||||| ||||| ||||||||||| || || |||||||| | Sbjct 2024637 TCAGCCAAAAGATGGCAGCGAATGAACCGGAGAAGAAGATTCCCTCCACAGCAGCAAAAG 2024696 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||| || Sbjct 2024697 CCACAATTCGCTCACC 2024712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629742612342000